2020-02-17 |
Jim Procter | JAL-3187 better semantics for feature settings closed... |
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2020-02-14 |
Jim Procter | JAL-3532 TODO comment |
tree | commitdiff |
2020-02-14 |
Jim Procter | fix for JAL-3529 |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 preferentially output source dbrefs or princip... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3187 alternative solution - gather feature settings... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... |
tree | commitdiff |
2020-02-12 |
Jim Procter | JAL-3187 applet alignFrame needs new api method |
tree | commitdiff |
2020-02-12 |
Jim Procter | JAL-3187 first stab at ‘show CDS/Protein Settings’... |
tree | commitdiff |
2020-02-12 |
Jim Procter | JAL-3187 view controller UI api method to show feature... |
tree | commitdiff |
2020-02-12 |
Jim Procter | JAL-3187 convenience method on SplitContainerI to retri... |
tree | commitdiff |
2020-02-12 |
Jim Procter | JAL-1354 JAL-3528 report missing keys for MessageManage... |
tree | commitdiff |
2020-02-04 |
gmungoc | JAL-2422 remove temporary debug code |
tree | commitdiff |
2020-02-04 |
gmungoc | JAL-2422 fixed stopProgressBar (broken in pull up refac... |
tree | commitdiff |
2020-02-04 |
gmungoc | JAL-2422 pull up refactoring in preparation for Chimera... |
tree | commitdiff |
2020-01-31 |
gmungoc | JAL-2422 temporary hacks removed; use hex colours for... |
tree | commitdiff |
2020-01-31 |
gmungoc | JAL-2422 more responsive Chimera/X path prompts in... |
tree | commitdiff |
2020-01-30 |
gmungoc | JAL-2422 save/restore ChimeraX session |
tree | commitdiff |
2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into... |
tree | commitdiff |
2020-01-28 |
gmungoc | JAL-3187 one more obsolete method removed |
tree | commitdiff |
2020-01-28 |
gmungoc | JAL-2422 ChimeraX added to Preferences |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
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2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2020-01-16 |
Jim Procter | Merge branch 'improvement/JAL-3449_add_install4j_instal... |
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2020-01-16 |
Jim Procter | Merge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... |
tree | commitdiff |
2020-01-14 |
gmungoc | JAL-2422 proof of concept adaptations for ChimeraX... |
tree | commitdiff |
2020-01-10 |
Ben Soares | JAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... |
tree | commitdiff |
2020-01-09 |
Ben Soares | JAL-3477 Refactoring based on CR-JAL-189 |
tree | commitdiff |
2020-01-09 |
Ben Soares | JAL-3477 Javadoc, refactoring and slight changes to... |
tree | commitdiff |
2019-12-20 |
Ben Soares | JAL-3473 Checked value of def and min. Set def to min... |
tree | commitdiff |
2019-12-20 |
Ben Soares | JAL-3473 Checked value of def and min. Set def to min... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 'label' command to highlight ChimeraX residue... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 write Jalview features to ChimeraX via command... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 basic proof of concept of ChimeraX opened... |
tree | commitdiff |
2019-12-06 |
Ben Soares | JAL-3449 Added more versions to getdown splashscreen... |
tree | commitdiff |
2019-11-22 |
Ben Soares | JAL-3449 install4j version, install4j template version... |
tree | commitdiff |
2019-11-20 |
Ben Soares | JAL-3477 A bit of refactoring for the better |
tree | commitdiff |
2019-11-19 |
Ben Soares | JAL-3210 removing overly complicated logging. Settling... |
tree | commitdiff |
2019-11-19 |
gmungoc | JAL-3210 use JSUtil methods getFileBytes, getApplet |
tree | commitdiff |
2019-11-18 |
Ben Soares | JAL-3477 New jvmmemmax config option in getdown and... |
tree | commitdiff |
2019-11-18 |
Ben Soares | JAL-3477 New sensible default decisions on memory,... |
tree | commitdiff |
2019-11-12 |
gmungoc | JAL-3274 resource path correction, code tidying (consta... |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3210 JAL-3130 skip Taskbar in JalviewJS |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3210 reverted (ignore previous commit) |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3210 JAL-3130 can't read java.specification.version... |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3120 JAL-3130 can't read "java.specification.versio... |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS |
tree | commitdiff |
2019-11-05 |
gmungoc | JAL-3210 JAL-3263 redo 'Mandarin' character for JS... |
tree | commitdiff |
2019-11-01 |
Ben Soares | JAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files |
tree | commitdiff |
2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in... |
tree | commitdiff |
2019-10-11 |
Ben Soares | JAL-3210 Just about working transpilation. Some work... |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-09-26 |
gmungoc | JAL-2481 remove code duplication left by merge |
tree | commitdiff |
2019-09-26 |
gmungoc | JAL-3441 action double-click in Feature Type column... |
tree | commitdiff |
2019-08-23 |
gmungoc | JAL-3141 correct cast of spinner value |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | Merge branch 'develop' into feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3187 one more obsolete method removed |
tree | commitdiff |
2019-08-21 |
gmungoc | JAL-3187 minor code tidying, todo removal |
tree | commitdiff |
2019-08-19 |
gmungoc | JAL-3412 calculateIdWidth - more consistency, constants... |
tree | commitdiff |
2019-08-09 |
gmungoc | JAL-3187 removal of variant feature (non-virtual) trans... |
tree | commitdiff |
2019-08-07 |
gmungoc | JAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-08-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-31 |
gmungoc | JAL-3389 add .py to restored Chimera session filename... |
tree | commitdiff |
2019-07-31 |
gmungoc | Merge branch 'bug/JAL-3388structureChooserSorting'... |
tree | commitdiff |
2019-07-30 |
gmungoc | JAL-3198 more efficient Sequence.getDisplayId() |
tree | commitdiff |
2019-07-30 |
gmungoc | JAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3386 correct wrapped width calculation for headless... |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3377 more reused of SeqCanvas.computeWrappedGeometry |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3377 add seq-annotations gap to cheight not to... |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3377 Javadoc added for getWrappedHeight() |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3377 corrected wrapped widths height for IdCanvas |
tree | commitdiff |
2019-07-29 |
gmungoc | JAL-3377 include seq-annotation spacing in getWrappedHe... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-19 |
gmungoc | JAL-3371 lastVal now String not Object |
tree | commitdiff |
2019-07-19 |
gmungoc | JAL-3371 remove unused field |
tree | commitdiff |
2019-07-19 |
gmungoc | JAL-3371 use gui.Slider for OptAndParamPage min-max... |
tree | commitdiff |
2019-07-18 |
gmungoc | JAL-3371 JAL-2983 add gui.Slider to handle negative... |
tree | commitdiff |
2019-07-16 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-2983 slider 'translated' to have a non-negative... |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3144 better error message if no database selected |
tree | commitdiff |
2019-07-16 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-2987 tolerate null double values when formatting... |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 MCview now mc_view |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-3187 initial refactoring towards peptide variant... |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-07-02 |
Jim Procter | JAL-3111 JAL-3280 hide the version check preference... |
tree | commitdiff |
2019-07-02 |
Jim Procter | Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu |
tree | commitdiff |
2019-07-02 |
gmungoc | JAL-3071 restore correct if-else branches in startScrolling |
tree | commitdiff |
2019-07-01 |
Ben Soares | JAL-3333 removed unused variable |
tree | commitdiff |
2019-07-01 |
Ben Soares | JAL-3333 using floats for smoother weighting |
tree | commitdiff |
2019-06-29 |
Ben Soares | JAL-3333 Sorry couldn't resist adding a bit of weightin... |
tree | commitdiff |
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