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castor-1.1 compatible classes from ant task
[jalview.git]
/
src
/
2007-03-22
amwaterhouse
Saves Jmol status
tree
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commitdiff
2007-03-19
jprocter
DAS features mapped to local reference frame
tree
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commitdiff
2007-03-19
jprocter
translate aligned cDNA to aligned peptide
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commitdiff
2007-03-19
jprocter
retrieve and parse EMBL records to view exons.
tree
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commitdiff
2007-03-19
jprocter
convenience method to get visible selected region.
tree
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commitdiff
2007-03-19
jprocter
null exception when annotation created with no description.
tree
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commitdiff
2007-03-19
jprocter
New method for mapping from common database sources...
tree
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commitdiff
2007-03-19
jprocter
note about selenocystine.
tree
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commitdiff
2007-03-19
jprocter
disambiguate jalview.datamodel.Mapping from castor...
tree
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commitdiff
2007-03-19
jprocter
initial support for EMBL file parsing.
tree
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commitdiff
2007-03-19
jprocter
equals operation used for canonicalisation of DBRefList...
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commitdiff
2007-03-19
jprocter
mapping implemented by MapList added to DBRefEntry.
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commitdiff
2007-03-19
jprocter
javadoc typo
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commitdiff
2007-03-19
jprocter
copy constructor
tree
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commitdiff
2007-02-27
amwaterhouse
Uncomment graphics 2d bit
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commitdiff
2007-02-27
amwaterhouse
Launch applet jmol
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commitdiff
2007-02-27
amwaterhouse
Use paintAlignment
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commitdiff
2007-02-27
amwaterhouse
check conservation length
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commitdiff
2007-02-27
amwaterhouse
Structure listener
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commitdiff
2007-02-27
amwaterhouse
remove p+3 < query.length
tree
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commitdiff
2007-02-27
amwaterhouse
No longer use ref to seqcanvas for painting
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commitdiff
2007-02-27
amwaterhouse
blank space for chain name if empty
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commitdiff
2007-02-27
amwaterhouse
keep record of atomIndeX
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commitdiff
2007-02-27
amwaterhouse
jmol added
tree
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commitdiff
2007-02-12
amwaterhouse
>0 rather than -1 check
tree
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commitdiff
2007-02-12
jprocter
tranfer pdbresno features to dataset sequence.
tree
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commitdiff
2007-02-12
amwaterhouse
Reload jar files
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commitdiff
2007-02-12
amwaterhouse
Hashtable for previously loaded pdb files
tree
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commitdiff
2007-02-12
amwaterhouse
Make checkbox bigger for text on mac
tree
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commitdiff
2007-02-09
jprocter
added 'show overview' preference.
tree
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commitdiff
2007-02-08
jprocter
fix on newquestionaire notification bug (again)
tree
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commitdiff
2007-02-07
amwaterhouse
formatted
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commitdiff
2007-02-07
amwaterhouse
restore unformatted state
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commitdiff
2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-02-07
amwaterhouse
formatting
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commitdiff
2007-02-07
amwaterhouse
Extend annotation if too short
tree
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commitdiff
2007-02-07
amwaterhouse
reload, just close this frame and open a new one
tree
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commitdiff
2007-02-06
jprocter
hardwired default user questionnaire url and by default...
tree
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commitdiff
2007-02-06
jprocter
more bugfixes.
tree
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commitdiff
2007-02-06
amwaterhouse
Dont add null description to tooltip
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commitdiff
2007-02-06
amwaterhouse
Applet params cant read tab character
tree
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commitdiff
2007-02-06
amwaterhouse
Allow for frame insets
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commitdiff
2007-02-06
amwaterhouse
Format label
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commitdiff
2007-02-06
jprocter
debug log message
tree
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commitdiff
2007-02-05
jprocter
simplified and refactored along with cgi-script.
tree
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commitdiff
2007-02-05
amwaterhouse
Alignment editing columns 0 and 1 fixed
tree
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commitdiff
2007-02-05
jprocter
command line hook for questionnaire url argument.
tree
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commitdiff
2007-02-05
jprocter
kkv change
tree
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commitdiff
2007-02-05
jprocter
client side machinery for user questionnaire responses
tree
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commitdiff
2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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commitdiff
2007-02-05
amwaterhouse
stop flickering annotationPanel
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commitdiff
2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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commitdiff
2007-02-05
amwaterhouse
image is panel size
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commitdiff
2007-02-05
amwaterhouse
applet can define groups as parameters
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commitdiff
2007-02-02
amwaterhouse
Dont add group if seqs not found
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commitdiff
2007-02-02
amwaterhouse
getWidth -1 for trim right
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commitdiff
2007-02-02
amwaterhouse
check annotation size when cutting
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commitdiff
2007-02-02
amwaterhouse
annotation might have been deleted
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commitdiff
2007-02-02
amwaterhouse
catch control down before editing null pointer
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commitdiff
2007-02-02
amwaterhouse
22 = scrollbar and insets widthcvs diff gui/AlignmentPa...
tree
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commitdiff
2007-02-02
amwaterhouse
Must allow for scollbar and frame insets when getting...
tree
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commitdiff
2007-02-02
amwaterhouse
LookandFeel must be set in headless state as window...
tree
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commitdiff
2007-02-01
amwaterhouse
removed deprecated bits
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commitdiff
2007-02-01
amwaterhouse
find colours uncommented
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commitdiff
2007-02-01
amwaterhouse
sequence.getStart() in findTrueIndex
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commitdiff
2007-02-01
amwaterhouse
get fontmetrics from pg
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commitdiff
2007-02-01
amwaterhouse
Dont add null tooltip
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commitdiff
2007-02-01
amwaterhouse
New description
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commitdiff
2007-02-01
amwaterhouse
tooltips
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commitdiff
2007-02-01
amwaterhouse
set description for groups
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commitdiff
2007-02-01
amwaterhouse
Doesnt move with mouse, friendlier for mac users
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commitdiff
2007-02-01
amwaterhouse
Dont repaint tooltip
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commitdiff
2007-02-01
amwaterhouse
One class for edit name/description
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commitdiff
2007-01-31
amwaterhouse
slightly larger window edit name/desc
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commitdiff
2007-01-31
amwaterhouse
edit annotation name/description
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commitdiff
2007-01-31
amwaterhouse
Can edit annotation name/description
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commitdiff
2007-01-31
amwaterhouse
Consensus, conservation, quality labels may have changed
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commitdiff
2007-01-31
amwaterhouse
aligned not used
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commitdiff
2007-01-31
amwaterhouse
Dont export annotations if not visible
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commitdiff
2007-01-31
amwaterhouse
Unique name for new group and treegroup
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commitdiff
2007-01-31
amwaterhouse
Adjust features when cutting and pasting
tree
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commitdiff
2007-01-31
amwaterhouse
make new dataset seq if residues deleted
tree
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commitdiff
2007-01-31
amwaterhouse
copy feature: check for null values
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commitdiff
2007-01-30
amwaterhouse
Check valid residues in ss
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commitdiff
2007-01-30
amwaterhouse
Check seqs in group exist in this alignment
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commitdiff
2007-01-30
amwaterhouse
Any character non aa or nucleotide is a space
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commitdiff
2007-01-30
amwaterhouse
moved painting routine
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commitdiff
2007-01-30
amwaterhouse
consensusColouring never used
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commitdiff
2007-01-30
amwaterhouse
Draw helices correctly
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commitdiff
2007-01-30
amwaterhouse
Use util toHexString
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commitdiff
2007-01-30
amwaterhouse
Output groups in annotation file
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commitdiff
2007-01-29
amwaterhouse
Dont clear graphics g before drawing the image
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commitdiff
2007-01-29
amwaterhouse
Image for labels, stops flickering
tree
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commitdiff
2007-01-29
amwaterhouse
New view copies annotations across
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commitdiff
2007-01-29
amwaterhouse
Tooltips for group names, descriptions
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commitdiff
2007-01-29
amwaterhouse
Description added
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commitdiff
2007-01-29
amwaterhouse
SequenceGroup parsing added to annotation file
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commitdiff
2007-01-29
amwaterhouse
ID_ITALICS option in preferences
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commitdiff
2007-01-29
amwaterhouse
scaleAbove, left and right set when tab selection changes
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commitdiff
2007-01-29
amwaterhouse
Marios annotation bug fixed
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commitdiff
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