JAL-2228 always create zero score annotations, since select/hide annotation filter...
[jalview.git] / src /
2017-05-08 kiramtJAL-2491 More wrap corrections
2017-05-08 gmungocJAL-1632 i18n for warning messages
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'...
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom...
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515
2017-05-08 kiramtJAL-2512 And applet
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour...
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 tcofoegbuJAL-2484 adjusted default cache settings panel's left...
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling
2017-05-04 tcofoegbuJAL-1648 improvements: enter key closes the popup and...
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque...
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient...
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types...
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota...
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat...
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-03 kiramtJAL-2491 Tidies
2017-05-03 kiramtJAL-2491 Wrapped panel scrolling
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into...
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value...
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when...
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value...
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox
2017-05-03 Jim ProcterJAL-2432 simplify code
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction...
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons...
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for...
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-05-02 gmungocJAL-2499 inlined two 1-line methods
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 kiramtJAL-2491 first addition of new event
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide...
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for...
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-26 kiramtJAL-2388 Tidies and unit tests
2017-04-25 kiramtJAL-2388 Missed file from previous commit
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles
2017-04-25 kiramtJAL-2388 And corrected OverviewCanvas for applet
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions...
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-25 tcofoegbuJAL-1648 enabled caching for Select / Hide columns...
2017-04-24 tcofoegbuJAL-1648 House keeping
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
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