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JAL-1083 graceful failover to one ID per sequences query for sources that fail for...
[jalview.git]
/
src
/
2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
tree
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commitdiff
2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
tree
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commitdiff
2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 - conditional to hide the RSBS service editing...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 rsbs service editing
tree
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commitdiff
2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
tree
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commitdiff
2011-08-30
jprocter
JAL-715 store/reset .jalview_properties setting for...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 serialise and deserialise multiple rest client...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 - notify user of parsing problems for results...
tree
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commitdiff
2011-08-30
jprocter
retrieve URL for datasource of packed set
tree
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commitdiff
2011-08-30
jprocter
ensure parsing errors and 'lack of data' errors are...
tree
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commitdiff
2011-08-30
jprocter
JAL-715 need to URLencode constant values when serializ...
tree
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commitdiff
2011-08-29
jprocter
JAL-715 - grammar for warning message.
tree
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commitdiff
2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
tree
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
tree
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commitdiff
2011-08-29
jprocter
JAL-633 simple concrete parameter and option objects...
tree
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commitdiff
2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
tree
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commitdiff
2011-08-28
janengelhardt
Including of VARNAv-3.9;
tree
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commitdiff
2011-08-25
jprocter
constructor only needs GUI container interface
tree
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commitdiff
2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
tree
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commitdiff
2011-08-25
jprocter
JAL-715 - better validation logic
tree
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commitdiff
2011-08-25
jprocter
debug dialog
tree
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commitdiff
2011-08-25
jprocter
JAL-715 - prevent empty elements being generated
tree
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commitdiff
2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
tree
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commitdiff
2011-08-24
jprocter
JAL-715 bugfixes and refactor of parsing code for use...
tree
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commitdiff
2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
tree
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commitdiff
2011-08-23
jprocter
JAL-715 - simple tests and functions for IO of service...
tree
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commitdiff
2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
tree
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commitdiff
2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
tree
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commitdiff
2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
tree
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commitdiff
2011-08-18
jprocter
remove debug message
tree
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commitdiff
2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
tree
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commitdiff
2011-08-18
jprocter
minor efficiency refactor
tree
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commitdiff
2011-08-17
jprocter
JAL-853 use service action attribute to index services...
tree
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commitdiff
2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
tree
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commitdiff
2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
fix for JAL-888
tree
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commitdiff
2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
tree
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commitdiff
2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
tree
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commitdiff
2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
tree
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commitdiff
2011-08-16
janengelhardt
JAL-842; Text element containing the structure is not...
tree
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commitdiff
2011-08-15
janengelhardt
JAL-891; Tooltips for Structure logos implemented;
tree
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commitdiff
2011-08-15
janengelhardt
JAL-878; Structures associated to a sequence are availa...
tree
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commitdiff
2011-08-15
jprocter
JAL-750 - automaticScrolling=true by default. Refactore...
tree
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commitdiff
2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
tree
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commitdiff
2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
tree
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commitdiff
2011-08-15
janengelhardt
JAL-891; Labeling of structure conservation is improved...
tree
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commitdiff
2011-08-15
janengelhardt
JAL-891; Sorting of Structure logo implemented; bug...
tree
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commitdiff
2011-08-11
jprocter
avoid NPE for null annotation element columns JAL-896
tree
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commitdiff
2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
tree
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commitdiff
2011-08-10
janengelhardt
JAL-885; Structure conservation row is just added if...
tree
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commitdiff
2011-08-09
janengelhardt
JAL-891; base-pair logos can now be activated for structure
tree
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commitdiff
2011-08-08
janengelhardt
JAL-891; structure logo is adapted to two char's; Missi...
tree
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commitdiff
2011-08-08
janengelhardt
JAL-891; sequence logos are available on structure...
tree
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commitdiff
2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
tree
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commitdiff
2011-08-05
jprocter
allow several progress bars on the desktop window ...
tree
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commitdiff
2011-08-04
jprocter
JAL-896 - patch to ensure arrows in different direction...
tree
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commitdiff
2011-08-04
jprocter
JAL-883 - refactored and debugged arrow, stem and helix...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
fix NPE when applets stop. seems to make the simple...
tree
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commitdiff
2011-08-03
janengelhardt
JAL-885; Multi-helix bug is solved; One should think...
tree
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commitdiff
2011-08-03
jprocter
refactor schema to group swing window geometry attributes
tree
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commitdiff
2011-07-31
janengelhardt
JAL-885; StructureConservation row is displayed at...
tree
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commitdiff
2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
tree
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commitdiff
2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
tree
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-25
janengelhardt
some print statements to test things
tree
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commitdiff
2011-07-25
janengelhardt
JAL-882; VARNA crashed when non-standard gaps where...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-878; Additional structures with a 'GR' tag in Stock...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; Implement transmitting of Jalview Sequence...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842: some bugfixes;
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; Added the TextField to edit structure in VARNA
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; trimming single structures for single sequence...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842; Give Varna frames name for window organizer...
tree
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commitdiff
2011-07-25
janengelhardt
Varna external frame bug solved
tree
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commitdiff
2011-07-25
janengelhardt
Reorganize the class structure, unfortunately breaks...
tree
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commitdiff
2011-07-25
janengelhardt
clean code
tree
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commitdiff
2011-07-25
janengelhardt
Further structure accessing feature
tree
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commitdiff
2011-07-25
janengelhardt
Changed location of VARNAv3-8b.jar; small changes
tree
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commitdiff
2011-07-25
janengelhardt
jal-842; sequence transmitting to Varna included
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842, AppVarnaBinding was filled with a minimalistic...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-842, Further creation of VARNA classes (probably...
tree
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commitdiff
2011-07-25
janengelhardt
Container for VARNA classes are created according to...
tree
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commitdiff
2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
tree
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commitdiff
2011-07-25
janengelhardt
'Fix Group Colour bug' merge; JAL-580
tree
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commitdiff
2011-07-25
janengelhardt
'Update to Covariaton color scheme' merge; JAL-580
tree
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commitdiff
2011-07-25
janengelhardt
'Add Rfam database sequence retrieval' merged; JAL-580
tree
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commitdiff
2011-07-25
janengelhardt
Start merging of Laurens Code
tree
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commitdiff
2011-07-25
janengelhardt
New branch created and author list changed to test...
tree
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commitdiff
2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
tree
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commitdiff
2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
tree
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commitdiff
2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
tree
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commitdiff
2011-07-22
jprocter
code style
tree
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
tree
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commitdiff
2011-07-22
jprocter
method to get a user default colour (JAL-234)
tree
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commitdiff
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