JAL-2808 feature filters held on FeatureRenderer, getColor(feature)
[jalview.git] / src /
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo...
2017-11-02 gmungocJAL-2808 convenience method to get attribute as String
2017-11-02 gmungocJAL-2808 attribute filtering removed, extract method...
2017-11-02 gmungocJAL-2808 reverted to develop (attribute filters removed)
2017-11-02 gmungocJAL-2808 toString modified, tests corrected
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into
2017-10-31 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-31 gmungocJAL-2791 select columns by _visible_ features
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi...
2017-10-31 gmungocJAL-2808 reduce code with WindowAdapter
2017-10-30 gmungocJAL-2791 check feature visibility when selecting columns
2017-10-30 gmungocJAL-2808 add attribute filter options to graduate colou...
2017-10-30 gmungocJAL-2792 Javadoc updates
2017-10-30 gmungocJAL-2808 add attribute filter(s) to FeatureColour
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute...
2017-10-27 gmungocJAL-2526 updated javadoc
2017-10-27 gmungocJAL-2792 include source in copy constructor; null point...
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature...
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover...
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
2017-10-26 Jim ProcterJAL-2793 cancelling font changed dialog didn't call...
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-26 Jim ProcterMerge branch 'bug/JAL-2776toggleGroupColour' into develop
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome...
2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...
2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon...
2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key
2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure...
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into...
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl...
2017-10-24 gmungocJAL-1739 Javadoc updated for Lambda expression parser...
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-23 gmungocJAL-2776 repaint everything on toggle group colour bug/JAL-2776toggleGroupColour
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress...
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle...
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager...
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede...
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253
2017-10-20 gmungocJAL-2755 update caller for method rename!
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change
2017-10-19 gmungocJAL-2609 adjustments for test findings
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible
2017-10-19 gmungocJAL-2755 put chromosomal dbref first in report
2017-10-19 gmungocJAL-2755 add lookup of cds/cdna gene loci
2017-10-19 gmungocJAL-2755 add species lookup
2017-10-19 gmungocJAL-2755 add missing Javadoc
2017-10-19 gmungocJAL-2755 rename EnsemblInfo as EnsemblData, add 'true...
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen...
2017-10-18 Jim ProcterJAL-2779 remove dead code
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when...
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t...
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe...
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional...
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of...
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of...
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into...
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery
2017-10-11 gmungocJAL-2738 javadoc correction
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
2017-10-11 kiramtJAL-2609attemptedmerge tidy
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-10 kiramtJAL-2690attemptedmerge seems to work
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate...
2017-10-10 Jim ProcterJAL-2392 formatting
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop
2017-10-10 kiramtJAL-2690attemptedmerge partial merge
2017-10-10 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method.
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