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fixed getObject(VorbaId) lookup in vamsas-client
[jalview.git] / src /
2007-05-18 jprocterfixed getObject(VorbaId) lookup in vamsas-client tree | commitdiff
2007-05-18 jprocterupdate to and from document (and remove deprecated... tree | commitdiff
2007-05-18 jprocterremoved uneccessary vamsasLoad commented out. tree | commitdiff
2007-05-17 jprocterrefining - still debugging. tree | commitdiff
2007-05-17 jprocteruse of proper vamsas client API by Jalview tree | commitdiff
2007-05-17 jproctermodified castor-1.1 library and refactored uk.ac.vamsas tree | commitdiff
2007-05-15 amwaterhouseSequenceListener highlights SearchResults, not just... tree | commitdiff
2007-05-14 amwaterhouseInvert mouse drag controls tree | commitdiff
2007-05-10 jprocterapparent bug in JpredFile parser where annotation was... tree | commitdiff
2007-05-10 jprocterensure that only annotation referenced in given alignme... tree | commitdiff
2007-05-10 jprocterdocumentation tree | commitdiff
2007-05-10 jprocterbugfix on copy only referenced annotation in copy const... tree | commitdiff
2007-05-10 jprocterfixed array index out of bounds when not removing align... tree | commitdiff
2007-05-10 amwaterhousevisibility setting tree | commitdiff
2007-05-10 amwaterhouseKeep record of last tooltip tree | commitdiff
2007-05-10 amwaterhouseVisible state of annotation tree | commitdiff
2007-05-10 amwaterhouseAdd show all hidden menu tree | commitdiff
2007-05-10 amwaterhouseDont duplicate annotations in multiple views tree | commitdiff
2007-05-10 amwaterhousesave visible state of annotation tree | commitdiff
2007-05-09 jproctermain method for running from command line and better... tree | commitdiff
2007-05-09 amwaterhouseminor formatting of tooltip tree | commitdiff
2007-05-08 jprocterdialog box menu item naming tree | commitdiff
2007-05-08 amwaterhousecheck for null annotations tree | commitdiff
2007-05-08 amwaterhouseset picking label tree | commitdiff
2007-05-08 amwaterhouseinstant update when seq colour is pressed tree | commitdiff
2007-05-08 amwaterhousemust specify .CA tree | commitdiff
2007-05-08 amwaterhouseremove system.out tree | commitdiff
2007-05-08 amwaterhousesmall sphere for alpha carbon tree | commitdiff
2007-05-08 amwaterhouseaddElement tree | commitdiff
2007-05-08 amwaterhousemirror image recitified tree | commitdiff
2007-05-07 amwaterhouseImage size must allow for scale height tree | commitdiff
2007-05-07 amwaterhousedif is never used tree | commitdiff
2007-05-07 amwaterhouseAllow for large font sizes tree | commitdiff
2007-05-07 amwaterhousedont use gold highlights tree | commitdiff
2007-05-07 amwaterhouseMax width for tooltip tree | commitdiff
2007-05-07 amwaterhousestill trying to prevent null painting tree | commitdiff
2007-05-07 amwaterhouseUse id hash to add pdb mappings back to alignment tree | commitdiff
2007-05-07 amwaterhousetIndex prevented deletion of last annotation tree | commitdiff
2007-05-07 amwaterhouseDont use gold colouring for highlight tree | commitdiff
2007-05-07 amwaterhouseUse PDB id for grouping mappings tree | commitdiff
2007-05-07 amwaterhousePDBViewer available if necessary tree | commitdiff
2007-05-04 amwaterhouseCheck bounds of loaded comp tree | commitdiff
2007-05-04 amwaterhouseremove system.out tree | commitdiff
2007-05-04 amwaterhouseadded tree | commitdiff
2007-05-04 amwaterhouseAdd dbrefs before zero length features tree | commitdiff
2007-05-04 amwaterhouselastCommand check tree | commitdiff
2007-05-04 amwaterhouseRename AppJMol to AppJmol - also AppJmol works with... tree | commitdiff
2007-05-04 amwaterhouseRenamed to AppJmol tree | commitdiff
2007-05-04 amwaterhouseNew example file for version 2.3 tree | commitdiff
2007-05-04 amwaterhouseNew example file for version 2.3 tree | commitdiff
2007-05-04 amwaterhouseSplash screen is not added using normal method, prevent... tree | commitdiff
2007-05-04 amwaterhouseAnnotations do not extend when full alignment is adjusted tree | commitdiff
2007-05-03 amwaterhousepdb id toUpperCase tree | commitdiff
2007-05-03 amwaterhouseoptimize repaints tree | commitdiff
2007-05-03 amwaterhouseremove system.out tree | commitdiff
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterfeature locations are retrieved by associated accession... tree | commitdiff
2007-05-02 jprocterpublic debug report log message to gather any cases... tree | commitdiff
2007-05-02 jprocterfixed getIntervals bug to ensure it returns range from... tree | commitdiff
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord... tree | commitdiff
2007-05-02 jprocterextractScores menu item disabled for release tree | commitdiff
2007-05-02 jprocteronly return non-empty subsequences when getting selecti... tree | commitdiff
2007-05-02 amwaterhouseAllow expansion of textarea for many sequence input tree | commitdiff
2007-05-02 amwaterhouseAMSA input set padgaps true tree | commitdiff
2007-05-02 amwaterhouseconvert space to gapchar tree | commitdiff
2007-05-02 jprocterundo stackempty error fix, refactored do and undo(... tree | commitdiff
2007-05-02 jprocterrefactored do and undo() method to take array of alignm... tree | commitdiff
2007-05-02 jproctercopy only the sequence associated alignment annotation... tree | commitdiff
2007-05-02 jproctersubsequence bound checks and constructor for selectivel... tree | commitdiff
2007-05-02 jprocterreturn flag indicating if annotations were actually... tree | commitdiff
2007-05-02 jprocterchecks for negative start column in restrict tree | commitdiff
2007-05-02 amwaterhousePadgaps is false by default tree | commitdiff
2007-05-01 amwaterhousesetVisible flag sent to EditNameDialog tree | commitdiff
2007-05-01 amwaterhousePad gaps method tree | commitdiff
2007-05-01 amwaterhouseMake sure annots are alignment width tree | commitdiff
2007-05-01 amwaterhouseuse jalviewLite to addFrame tree | commitdiff
2007-05-01 amwaterhouseremove system.out tree | commitdiff
2007-05-01 amwaterhouseset chains available tree | commitdiff
2007-05-01 amwaterhouseMultiple views/hidden region/undo out of index bug tree | commitdiff
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used... tree | commitdiff
2007-05-01 jprocterjavadoc tree | commitdiff
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec... tree | commitdiff
2007-05-01 jproctersort-by-score works of sequence-annotation, not alignme... tree | commitdiff
2007-05-01 amwaterhouseSave seqset properties tree | commitdiff
2007-04-30 jprocter'no sources selected' calls method on feature settings... tree | commitdiff
2007-04-30 jprocterfixed deadlock tree | commitdiff
2007-04-30 amwaterhousesetVisible replaces show tree | commitdiff
2007-04-30 jprocterrebuild sort by scores menu when new annotation is... tree | commitdiff
2007-04-30 jprocterpad should leave null annotations array null tree | commitdiff
2007-04-30 jprocterconvenient creation of 'score only' annotation. tree | commitdiff
2007-04-30 jprocterparse alignment properties and add annotation rows... tree | commitdiff
2007-04-30 jprocteralignment properties and embedded newick strings can... tree | commitdiff
2007-04-30 jprocterdssp 7-state to three state lookup tree | commitdiff
2007-04-30 jprocterjavadoc tree | commitdiff
2007-04-27 amwaterhouseremove excessive painting tree | commitdiff
2007-04-27 amwaterhouseREmove excessive painting tree | commitdiff
2007-04-27 amwaterhouseRepaint after feature added tree | commitdiff
2007-04-27 amwaterhousePrevent err when editing and overview drawing tree | commitdiff
2007-04-27 amwaterhouseFeatureRenderer mixups fixed tree | commitdiff
2007-04-27 amwaterhouseRemove system.out AppletPDBViewer.java tree | commitdiff
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