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Couple more thread names
[jalview.git] / src /
2017-10-26 kjvdheideCouple more thread names tree | commitdiff
2017-10-26 kjvdheidenamed most Jalview threads tree | commitdiff
2017-10-26 kjvdheideremoved accidental added enters, commented out broken... tree | commitdiff
2017-10-25 kjvdheidefinished up tests for trees made from jalview data tree | commitdiff
2017-10-25 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... tree | commitdiff
2017-10-25 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke... tree | commitdiff
2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... tree | commitdiff
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon... tree | commitdiff
2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key tree | commitdiff
2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure... tree | commitdiff
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into... tree | commitdiff
2017-10-24 kjvdheideTests for Aptx tree created from a Phylogeny object... tree | commitdiff
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange tree | commitdiff
2017-10-24 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop tree | commitdiff
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop tree | commitdiff
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... tree | commitdiff
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... tree | commitdiff
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager... tree | commitdiff
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede... tree | commitdiff
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 tree | commitdiff
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change tree | commitdiff
2017-10-19 gmungocJAL-2609 adjustments for test findings tree | commitdiff
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 remove dead code tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t... tree | commitdiff
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager tree | commitdiff
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe... tree | commitdiff
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop tree | commitdiff
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional... tree | commitdiff
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain tree | commitdiff
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of... tree | commitdiff
2017-10-13 kjvdheidebasic tests for Aptx tree | commitdiff
2017-10-13 kjvdheideArchaeopteryxInit is now static tree | commitdiff
2017-10-13 kjvdheidesimplified aptx frame creation code tree | commitdiff
2017-10-13 kjvdheideSlight Aptx colour change tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-10-12 kjvdheideCustom aptx configuration added tree | commitdiff
2017-10-12 kjvdheidemoved Aptx creation from CalculationChooser to separate... tree | commitdiff
2017-10-12 kjvdheideCreated test class for Archaeopteryx tree viewing tree | commitdiff
2017-10-11 kjvdheideforester as submodule with InternalFrame + start of... tree | commitdiff
2017-10-11 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds tree | commitdiff
2017-10-11 kjvdheidejust a comment tree | commitdiff
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... tree | commitdiff
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery tree | commitdiff
2017-10-11 kjvdheideAdded tree building (without distances yet) tree | commitdiff
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars tree | commitdiff
2017-10-11 kiramtJAL-2609attemptedmerge tidy tree | commitdiff
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... tree | commitdiff
2017-10-10 kiramtJAL-2690attemptedmerge seems to work tree | commitdiff
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate... tree | commitdiff
2017-10-10 Jim ProcterJAL-2392 formatting tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... tree | commitdiff
2017-10-10 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-10 kjvdheideStart of programmatically creating Aptx trees tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop tree | commitdiff
2017-10-10 kiramtJAL-2690attemptedmerge partial merge tree | commitdiff
2017-10-09 kjvdheidefixed incorrect panel title tree | commitdiff
2017-10-09 kjvdheideStart of creating tree nodes for Aptx tree | commitdiff
2017-10-09 kjvdheideFully separated tree GUI from calculation tree | commitdiff
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. tree | commitdiff
2017-10-07 kjvdheideRenaming tree | commitdiff
2017-10-06 kjvdheideStart of creating the objects Archaeopteryx needs tree | commitdiff
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response tree | commitdiff
2017-10-05 kjvdheideBlank interfaces added tree | commitdiff
2017-10-04 gmungocJAL-2523 start of refactoring... tree | commitdiff
2017-10-03 kjvdheideProper copyright dating added tree | commitdiff
2017-10-03 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-10-03 kjvdheideKept copyright test to just the new classes tree | commitdiff
2017-10-03 kjvdheideCopyright test tree | commitdiff
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology tree | commitdiff
2017-09-29 kjvdheideBegin separation of GUI and tree calculation logic origin/spikes/koen tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 formatting tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org tree | commitdiff
2017-09-29 kjvdheideMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS tree | commitdiff
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