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JAl-1705 ENSEMBL cDNA type cannot be queried with peptide IDs
[jalview.git]
/
src
/
2014-11-17
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-17
Jim Procter
Merge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
comand line support for svg generation
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commitdiff
2014-11-14
Charles Ofoegbu
Merge branch 'feature/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-11-14
Charles Ofoegbu
house keeping
features/JAL-1541_BioJsMSAViewer-export-option
tree
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commitdiff
2014-11-14
Charles Ofoegbu
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-11-14
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2014-11-14
Charles Ofoegbu
House keeping
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commitdiff
2014-11-14
gmungoc
JAL-1528 Chimera Help doc + fixes to setting colours
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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commitdiff
2014-11-13
gmungoc
merge
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commitdiff
2014-11-13
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
tree
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commitdiff
2014-11-13
gmungoc
JAL-1528 Chimera tidy errors, focus after align, close...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
house-keeping
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-11-12
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-12
Jim Procter
Merge branch 'develop' into features/JAL-1541_BioJsMSAV...
tree
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commitdiff
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
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commitdiff
2014-11-12
Jim Procter
JAL-974 fix class contamination for jalviewLite build
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commitdiff
2014-11-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
tree
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commitdiff
2014-11-12
Jim Procter
javadoc
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commitdiff
2014-11-12
Jim Procter
JAL-674 use the getMapping/transfer to transfer annotat...
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commitdiff
2014-11-12
Jim Procter
JAL-674 patch broken getMapping function
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commitdiff
2014-11-12
Jim Procter
JAL-674 switch from .transfer to .liftOver for transfer...
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commitdiff
2014-11-12
Jim Procter
JAL-674 note about broken .transfer method (expect...
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commitdiff
2014-11-12
Jim Procter
JAL-674 javadoc
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commitdiff
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
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commitdiff
2014-11-12
Charles Ofoegbu
Modified biojs exporter/importer to preserve SequenceFe...
tree
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commitdiff
2014-11-11
gmungoc
JAL-1527 opening a project saved with JMol should use...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to clean up and close...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to use class loader while...
tree
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commitdiff
2014-11-06
Charles Ofoegbu
Changes from JAL-1541 patch
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commitdiff
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1152annotationSorting' into...
tree
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-11-06
gmungoc
JAL-1152 use a proper RadioButton not a faked one
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commitdiff
2014-11-05
gmungoc
JAL-674 Prefences tweaks incl help documentation for...
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commitdiff
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
tree
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commitdiff
2014-11-04
gmungoc
JAL-1152 annotation sort algorithm optimisation
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commitdiff
2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
tree
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commitdiff
2014-11-03
gmungoc
Merge branch 'features/JAL-1152annotationSorting' of...
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commitdiff
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
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commitdiff
2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
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commitdiff
2014-11-03
Jim Procter
JAL-795 JAL-674 tweaked logic to avoid black annotation...
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commitdiff
2014-11-03
Jim Procter
fix for JAL-1579 create threshold object for annotation...
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commitdiff
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
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commitdiff
2014-11-03
Jim Procter
JAL-1578 formatting and imports
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commitdiff
2014-11-03
Jim Procter
JAL-1551 formatting
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commitdiff
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
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commitdiff
2014-11-03
Jim Procter
javadoc
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commitdiff
2014-10-31
gmungoc
JAL-1152 bug fix for 'no sort' case + tests for autocal...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional informat...
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commitdiff
2014-10-31
Charles Ofoegbu
JAL-1541 upadated BioJs emmitter to store alignment...
tree
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commitdiff
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
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commitdiff
2014-10-30
Jim Procter
JAL-674 hang on to sequences created by secondary parsi...
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
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commitdiff
2014-10-30
Jim Procter
JAL-674 propagate annotation onto mapped sequence and...
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
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commitdiff
2014-10-30
Jim Procter
JAL-674 use PDB ID<>File registry to look up correct...
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commitdiff
2014-10-30
Jim Procter
JAL-674 return original and replacement sequences and...
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commitdiff
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
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commitdiff
2014-10-30
Jim Procter
JAL-674 flag and proxy method to distinguish setMapping...
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commitdiff
2014-10-30
Jim Procter
JAL-674 map on StructureSelectionManager to record...
tree
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commitdiff
2014-10-30
Jim Procter
patch for JAL-795 - use base secondary structure colour...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
tree
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-353 updated patch for undo successive remove redund...
tree
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commitdiff
2014-10-30
Charles Ofoegbu
JAL-1541 BioJs MSA Viewer export option implementation
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commitdiff
2014-10-29
Charles Ofoegbu
JAL-353 updated patch for undo successive remove redund...
tree
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commitdiff
2014-10-29
Jim Procter
JAL-1264 JAL-674 method to copy annotation on structure...
tree
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commitdiff
2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation posit...
tree
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commitdiff
2014-10-28
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2014-10-28
gmungoc
JAL-1264 refactor to add menu options to _both_ sequenc...
tree
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commitdiff
2014-10-28
Charles Ofoegbu
2_8_2_Branch merge
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-353 undo for successive removal of redundant sequen...
tree
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-1250 Redundancy removal bug fix for Applet version
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commitdiff
2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
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commitdiff
2014-10-27
Charles Ofoegbu
Updated RedundancyPanel.java to referesh the tree view...
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commitdiff
2014-10-27
Charles Ofoegbu
Patch for redundancy removal
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commitdiff
2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
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commitdiff
2014-10-23
unknown
JAL-1521 updated xerces to 2.11 along with xml-apis
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commitdiff
2014-10-23
Jim Procter
patch fixes JAL-1558
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commitdiff
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 check for null vector before ...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 reinstate missing import
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commitdiff
2014-10-21
Jim Procter
JAL-674 initial implementation - only need to extract...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 JAL-1551 imports dropped during merge
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commitdiff
2014-10-21
Jim Procter
JAL-674 remove any spurious PDBEntrys generated by...
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commitdiff
2014-10-21
Jim Procter
JAL-674 methods and test for PDB derived annotation...
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commitdiff
2014-10-21
Jim Procter
JAL-674 store ID in MCview.PDBfile calcId string, not...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 don't create multiple secondary structure lines...
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commitdiff
2014-10-21
Jim Procter
JAL-674 test for presence of annotation derived from...
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commitdiff
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