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Merge branch 'develop' of https://source.jalview.org/git/jalview.git into kjvdh/featu...
[jalview.git]
/
src
/
2017-10-25
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2779 remove empty block and if statement
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2790 provide a cancel button for JABAWS and AACon...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2392 auto boxing rather than explicit Long as key
tree
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commitdiff
2017-10-24
gmungoc
JAL-2495 highlight all mapped sequences from structure...
tree
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commitdiff
2017-10-24
Jim Procter
Merge branch 'features/JAL-2608closeOverview' into...
tree
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commitdiff
2017-10-24
kjvdheide
Tests for Aptx tree created from a Phylogeny object...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2788 corrected merge error in propertyChange
tree
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commitdiff
2017-10-24
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2609attemptedmerge' into develop
tree
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commitdiff
2017-10-23
Jim Procter
JAL-2609 remove unused AlignPanel.fastPaint flag and...
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2609attemptedmerge' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2739' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2253' into develop
tree
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commitdiff
2017-10-23
gmungoc
JAL-1854 keep fallthrough but with comment to suppress...
tree
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commitdiff
2017-10-23
gmungoc
JAL-1854 remove fallthrough of switch case (Checkstyle...
tree
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commitdiff
2017-10-20
Jim Procter
JAL-2779 keep a reference to original Aqua manager...
tree
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commitdiff
2017-10-20
Jim Procter
JAL-2779 remove OSX platform specific import (not neede...
tree
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commitdiff
2017-10-20
gmungoc
JAL-2253 pull up constant, additional unit test
bug/JAL-2253
tree
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commitdiff
2017-10-20
gmungoc
JAL-2609 fully erase scale above, tidy code change
tree
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commitdiff
2017-10-19
gmungoc
JAL-2609 adjustments for test findings
tree
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commitdiff
2017-10-19
kiramt
Merge branch 'develop' into bug/JAL-2609attemptedmerge
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 switch order for updating the current alignmen...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 remove dead code
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 hook in our own AquaInternalFrameManager when...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 JAL-1551 source formatting
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 patch so closing most recent frame doesn’t...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 original version of AquaInternalFrame Manager
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2782 remark about possible exception due to unsafe...
tree
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commitdiff
2017-10-18
Jim Procter
Merge branch 'bugs/JAL-2777_whitespaceChain' into develop
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2777 remove duplicate code outside conditional...
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2773 renamed flags for clarity
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2777 patch for whitespace chain
bugs/JAL-2777_whitespaceChain
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2481 patch to fix findFeatureColour for end-of...
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2777 noticed exception raised on construction of...
tree
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commitdiff
2017-10-13
kjvdheide
basic tests for Aptx
tree
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commitdiff
2017-10-13
kjvdheide
ArchaeopteryxInit is now static
tree
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commitdiff
2017-10-13
kjvdheide
simplified aptx frame creation code
tree
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commitdiff
2017-10-13
kjvdheide
Slight Aptx colour change
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-12
kjvdheide
Custom aptx configuration added
tree
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commitdiff
2017-10-12
kjvdheide
moved Aptx creation from CalculationChooser to separate...
tree
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commitdiff
2017-10-12
kjvdheide
Created test class for Archaeopteryx tree viewing
tree
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commitdiff
2017-10-11
kjvdheide
forester as submodule with InternalFrame + start of...
tree
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commitdiff
2017-10-11
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
kjvdheide
just a comment
tree
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commitdiff
2017-10-11
gmungoc
JAL-2609 tidy label width code, some checkstyle warnings
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2757_uniprotftsbadquery' into...
tree
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commitdiff
2017-10-11
gmungoc
JAL-2757 fix PDB also; suppress stack trace and compile...
bug/JAL-2757_uniprotftsbadquery
tree
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commitdiff
2017-10-11
kjvdheide
Added tree building (without distances yet)
tree
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commitdiff
2017-10-11
kiramt
JAL-2742 removed unused getViewAsCigars
tree
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commitdiff
2017-10-11
kiramt
JAL-2609attemptedmerge tidy
tree
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commitdiff
2017-10-10
kiramt
Merge remote-tracking branch 'origin/features/JAL-2609f...
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge seems to work
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 wrap public progress bar methods as InvokeLate...
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 formatting
tree
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commitdiff
2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
tree
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commitdiff
2017-10-10
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-10
kjvdheide
Start of programmatically creating Aptx trees
tree
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commitdiff
2017-10-10
Jim Procter
Merge branch 'features/JAL-2523httpRetries' into develop
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge partial merge
tree
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commitdiff
2017-10-09
kjvdheide
fixed incorrect panel title
tree
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commitdiff
2017-10-09
kjvdheide
Start of creating tree nodes for Aptx
tree
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commitdiff
2017-10-09
kjvdheide
Fully separated tree GUI from calculation
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-09
gmungoc
JAL-2523 basic sleep and retry (3 times) on 429 respons...
features/JAL-2523httpRetries
tree
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commitdiff
2017-10-09
gmungoc
JAL-2523 convenience method to get model organisms
tree
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commitdiff
2017-10-09
Jim Procter
JAL-2446 remove duplicate code from pulled up method.
tree
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commitdiff
2017-10-07
kjvdheide
Renaming
tree
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commitdiff
2017-10-06
kjvdheide
Start of creating the objects Archaeopteryx needs
tree
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commitdiff
2017-10-05
Jim Procter
JAL-2757 reset textbox after a non HTTP 200 response
tree
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commitdiff
2017-10-05
kjvdheide
Blank interfaces added
tree
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commitdiff
2017-10-04
gmungoc
JAL-2523 start of refactoring...
tree
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commitdiff
2017-10-03
kjvdheide
Proper copyright dating added
tree
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commitdiff
2017-10-03
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-03
kjvdheide
Kept copyright test to just the new classes
tree
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commitdiff
2017-10-03
kjvdheide
Copyright test
tree
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commitdiff
2017-10-02
gmungoc
JAL-2525 lookup transcript features by Ontology
tree
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commitdiff
2017-09-29
kjvdheide
Begin separation of GUI and tree calculation logic
origin/spikes/koen
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
Revert "JAL-2745 update SIFTS FTP URL to HTTPS"
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update default EBI-eye search URL to HTTPS
feature/JAL-2745ebiHttps
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 update SIFTS FTP URL to HTTPS
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 stderr rather than stdout for unexpected HTTP...
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 stderr rather than stdout for unexpected HTTP...
tree
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commitdiff
2017-09-29
gmungoc
JAL-2745 update www.ebi.ac.uk to https
tree
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commitdiff
2017-09-28
gmungoc
JAL-2745 update www.ebi.ac.uk to https
tree
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commitdiff
2017-09-28
gmungoc
JAL-2036 set menus after fully loading AlignFrame
tree
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commitdiff
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