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JAL-2945 failing test for structure mapping
[jalview.git]
/
src
/
2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 Tidy
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 Fix unintended type change
tree
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commitdiff
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
tree
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commitdiff
2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 Tidy
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
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commitdiff
2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
tree
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commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
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commitdiff
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 Updated test
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
tree
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commitdiff
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
tree
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commitdiff
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
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commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
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commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
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commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
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commitdiff
2017-11-22
kiramt
JAL-2842 JAL-2759 change to SeqPanel moveCursor
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 code tidy
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance tweaks
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 reinstate change from develop (JAL-2636) someh...
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
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commitdiff
2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
tree
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commitdiff
2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
tree
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commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
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commitdiff
2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 ported to applet
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidy
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Missed commit
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'imp/JAL-2774' into bug/JAL-2831
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Tidy
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
next