2011-08-28 |
janengelhardt | Including of VARNAv-3.9; |
tree | commitdiff |
2011-08-16 |
janengelhardt | JAL-842; Text element containing the structure is not... |
tree | commitdiff |
2011-08-15 |
janengelhardt | JAL-891; Tooltips for Structure logos implemented; |
tree | commitdiff |
2011-08-15 |
janengelhardt | JAL-878; Structures associated to a sequence are availa... |
tree | commitdiff |
2011-08-15 |
janengelhardt | JAL-891; Labeling of structure conservation is improved... |
tree | commitdiff |
2011-08-15 |
janengelhardt | JAL-891; Sorting of Structure logo implemented; bug... |
tree | commitdiff |
2011-08-11 |
jprocter | avoid NPE for null annotation element columns JAL-896 |
tree | commitdiff |
2011-08-11 |
janengelhardt | JAL-885; hasRNAStructure method was introduced to Align... |
tree | commitdiff |
2011-08-10 |
janengelhardt | JAL-885; Structure conservation row is just added if... |
tree | commitdiff |
2011-08-09 |
janengelhardt | JAL-891; base-pair logos can now be activated for structure |
tree | commitdiff |
2011-08-08 |
janengelhardt | JAL-891; structure logo is adapted to two char's; Missi... |
tree | commitdiff |
2011-08-08 |
janengelhardt | JAL-891; sequence logos are available on structure... |
tree | commitdiff |
2011-08-04 |
jprocter | JAL-896 - patch to ensure arrows in different direction... |
tree | commitdiff |
2011-08-04 |
jprocter | JAL-883 - refactored and debugged arrow, stem and helix... |
tree | commitdiff |
2011-08-03 |
janengelhardt | JAL-885; Multi-helix bug is solved; One should think... |
tree | commitdiff |
2011-07-31 |
janengelhardt | JAL-885; StructureConservation row is displayed at... |
tree | commitdiff |
2011-07-29 |
janengelhardt | JAL-885; Implementation of StructureFrequency.java... |
tree | commitdiff |
2011-07-25 |
janengelhardt | some print statements to test things |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-882; VARNA crashed when non-standard gaps where... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-878; Additional structures with a 'GR' tag in Stock... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842; toy example to insert nucleotides in sequences... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842; Implement transmitting of Jalview Sequence... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842: some bugfixes; |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842; Added the TextField to edit structure in VARNA |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842; trimming single structures for single sequence... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842; Give Varna frames name for window organizer... |
tree | commitdiff |
2011-07-25 |
janengelhardt | Varna external frame bug solved |
tree | commitdiff |
2011-07-25 |
janengelhardt | Reorganize the class structure, unfortunately breaks... |
tree | commitdiff |
2011-07-25 |
janengelhardt | clean code |
tree | commitdiff |
2011-07-25 |
janengelhardt | Further structure accessing feature |
tree | commitdiff |
2011-07-25 |
janengelhardt | Changed location of VARNAv3-8b.jar; small changes |
tree | commitdiff |
2011-07-25 |
janengelhardt | jal-842; sequence transmitting to Varna included |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842, AppVarnaBinding was filled with a minimalistic... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-842, Further creation of VARNA classes (probably... |
tree | commitdiff |
2011-07-25 |
janengelhardt | Container for VARNA classes are created according to... |
tree | commitdiff |
2011-07-25 |
janengelhardt | JAL-841; Structure trigger token in jalview.io.Alignmen... |
tree | commitdiff |
2011-07-25 |
janengelhardt | 'Fix Group Colour bug' merge; JAL-580 |
tree | commitdiff |
2011-07-25 |
janengelhardt | 'Update to Covariaton color scheme' merge; JAL-580 |
tree | commitdiff |
2011-07-25 |
janengelhardt | 'Add Rfam database sequence retrieval' merged; JAL-580 |
tree | commitdiff |
2011-07-25 |
janengelhardt | Start merging of Laurens Code |
tree | commitdiff |
2011-07-25 |
janengelhardt | New branch created and author list changed to test... |
tree | commitdiff |
2011-07-22 |
jprocter | todo for JAL-860 - associate multiple sequences with... |
tree | commitdiff |
2011-07-22 |
jprocter | ensure propagation of colour change on annotation updat... |
tree | commitdiff |
2011-07-22 |
jprocter | fix NPE when annotation colourgradient is applied |
tree | commitdiff |
2011-07-22 |
jprocter | code style |
tree | commitdiff |
2011-07-22 |
jprocter | default parameter for colours in annotation shading... |
tree | commitdiff |
2011-07-22 |
jprocter | method to get a user default colour (JAL-234) |
tree | commitdiff |
2011-07-21 |
jprocter | retrieve all sequences matching a particular name ... |
tree | commitdiff |
2011-07-21 |
jprocter | ensure contents of hash is extended JAL-876 |
tree | commitdiff |
2011-07-18 |
jprocter | fixed mouseover problem - still need to deal with flick... |
tree | commitdiff |
2011-07-10 |
jprocter | progress when saving state (JAL-870) and hack to trap... |
tree | commitdiff |
2011-07-09 |
jprocter | documentation for menu item JAL-860 |
tree | commitdiff |
2011-07-09 |
jprocter | menu item and constructor to open a bunch of structures... |
tree | commitdiff |
2011-07-09 |
jprocter | refactored from PopupMenu (for JAL-860) |
tree | commitdiff |
2011-07-09 |
jprocter | todo re JAL-732 |
tree | commitdiff |
2011-07-09 |
jprocter | JAL-868 todo |
tree | commitdiff |
2011-07-08 |
jprocter | open each query result from an alignment datasource... |
tree | commitdiff |
2011-07-07 |
jprocter | comment re JAL-153 |
tree | commitdiff |
2011-07-07 |
jprocter | Set job title correctly and pass reason why |
tree | commitdiff |
2011-07-07 |
jprocter | extract sequence from DNA bases like 'DG' (JAL-866) |
tree | commitdiff |
2011-07-06 |
jprocter | ensure selseq is trimmed to just sequences included... |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "partial patch for JAL-411 - text rendered above... |
tree | commitdiff |
2011-07-05 |
jprocter | partial patch for JAL-411 - text rendered above features |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "Revert "needed for linkedapplets_ng.html (JAL... |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "needed for linkedapplets_ng.html (JAL-859,JAL... |
tree | commitdiff |
2011-07-05 |
jprocter | needed for linkedapplets_ng.html (JAL-859,JAL-469) |
tree | commitdiff |
2011-07-05 |
jprocter | whole frame should be validated. |
tree | commitdiff |
2011-07-05 |
jprocter | ignore any events after manager has already been finalized. |
tree | commitdiff |
2011-07-05 |
jprocter | refactor to send list of model filenames involved in... |
tree | commitdiff |
2011-07-05 |
jprocter | (JAL-856,JAL-621) |
tree | commitdiff |
2011-07-04 |
jprocter | jmb isn't created yet, so use another SSM provider |
tree | commitdiff |
2011-07-03 |
jprocter | TODO re JAL-433 - filter events if alignFrame is specif... |
tree | commitdiff |
2011-07-03 |
jprocter | documentation (JAL-859, JAL-816, JAL-621) |
tree | commitdiff |
2011-07-03 |
jprocter | extracted jalviewlite API calls as separate interface... |
tree | commitdiff |
2011-06-30 |
jprocter | set initial annotation panel height appropriately ... |
tree | commitdiff |
2011-06-29 |
jprocter | repaint image buffer height change (JAL-564) and ensure... |
tree | commitdiff |
2011-06-29 |
jprocter | repaint image buffer resize when panel height changes... |
tree | commitdiff |
2011-06-29 |
jprocter | preliminary patch to reduce problem observed in JAL-546 |
tree | commitdiff |
2011-06-29 |
jprocter | ensure annotation height adjuster doesn't disappear... |
tree | commitdiff |
2011-06-28 |
jprocter | fixes JAL-849 - double check after waiting a bit that... |
tree | commitdiff |
2011-06-24 |
jprocter | fix to preserve sequence numbering in MSF (JAL-847) |
tree | commitdiff |
2011-06-23 |
jprocter | jmb isn't created yet, so use another SSM provider |
tree | commitdiff |
2011-06-23 |
jprocter | patch for JAL-846 made targetChain mapping constraint... |
tree | commitdiff |
2011-05-30 |
jprocter | bug for clients using NJTree directly - pwtype should... |
tree | commitdiff |
2011-05-30 |
jprocter | first patch for JAL-838 - allow new typed of PID calcs |
tree | commitdiff |
2011-05-17 |
jprocter | refactor to allow distinct StructureSelectionManager... |
tree | commitdiff |
2011-05-17 |
jprocter | interface for objects at root of a jalview session's |
tree | commitdiff |
2011-05-17 |
jprocter | interface for handlers of alignmentViewPanel events |
tree | commitdiff |
2011-05-17 |
jprocter | cruisecontrol again |
tree | commitdiff |
2011-05-17 |
jprocter | another cc test |
tree | commitdiff |
2011-05-17 |
jprocter | test cruisecontrol |
tree | commitdiff |
2011-05-17 |
jprocter | test cruisecontrol |
tree | commitdiff |
2011-05-17 |
jprocter | ensure all colour statements added to string set |
tree | commitdiff |
2011-05-05 |
jprocter | uncommentable debug message for JAL-771 |
tree | commitdiff |
2011-05-05 |
jprocter | improved javascript callback execution thread and provi... |
tree | commitdiff |
2011-05-05 |
jprocter | separation of jmol script command generation from jmol... |
tree | commitdiff |
2011-05-05 |
jprocter | javadoc and informative error message when external... |
tree | commitdiff |
2011-05-05 |
jprocter | ensure feature renderer settings come from the given... |
tree | commitdiff |
2011-05-05 |
jprocter | added simple stdout debug function |
tree | commitdiff |
2011-04-25 |
jprocter | JAL-824 - additional methods to allow jmol colouring... |
tree | commitdiff |
next |