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preliminary states for pca distribution io
[jalview.git]
/
src
/
2007-04-25
amwaterhouse
fix recent file type bug
tree
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commitdiff
2007-04-25
amwaterhouse
alignmentProperties added
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commitdiff
2007-04-25
jprocter
Functions for parsing free text properties on sequences...
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commitdiff
2007-04-25
jprocter
transfer of residue numbering as alignment annotation
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
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commitdiff
2007-04-24
jprocter
bugfix for sequence features mapped to multiple contigs...
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commitdiff
2007-04-24
jprocter
updated mapping for EMBL_Services_V1.1.xsd and tested...
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commitdiff
2007-04-23
jprocter
functions that operate on references to sequences in...
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commitdiff
2007-04-23
jprocter
distinct methods for getting references to selected...
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commitdiff
2007-04-23
amwaterhouse
getColour method added
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commitdiff
2007-04-23
amwaterhouse
Check for null displayCharacters
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commitdiff
2007-04-23
amwaterhouse
Dbref fetcher takes sequences, not alignment
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commitdiff
2007-04-23
amwaterhouse
getColour added to structures
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commitdiff
2007-04-23
amwaterhouse
Test out new arrangement
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commitdiff
2007-04-23
amwaterhouse
Get colour from structure added
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commitdiff
2007-04-23
amwaterhouse
check dispalyChar is not null
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commitdiff
2007-04-23
amwaterhouse
Check displayChar is not null
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commitdiff
2007-04-23
amwaterhouse
Colour is null
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commitdiff
2007-04-23
amwaterhouse
remove seqref annotations
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commitdiff
2007-04-23
amwaterhouse
remove alignmentAnnotation added
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commitdiff
2007-04-23
amwaterhouse
Only fetch refs for seelcted sequences
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commitdiff
2007-04-20
jprocter
fix null annotation values
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commitdiff
2007-04-20
jprocter
global dbref fetch option in web services menu.
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commitdiff
2007-04-20
jprocter
value only annotation
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commitdiff
2007-04-20
jprocter
adds annotation for display (with flag to set alignment...
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commitdiff
2007-04-20
jprocter
annotation and seqs vectors are protected members for...
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commitdiff
2007-04-19
jprocter
tfactor annotation description includes full sequenceID
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commitdiff
2007-04-19
jprocter
tfactor and occupancy extracted from PDB file, and...
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commitdiff
2007-04-19
jprocter
bugfix
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commitdiff
2007-04-19
jprocter
fixed column selection cut/paste and self paste.
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commitdiff
2007-04-19
jprocter
sequence associated alignment annotation copy for colum...
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commitdiff
2007-04-19
jprocter
ensure edit command gapChar is updated and used for...
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commitdiff
2007-04-19
jprocter
padGaps flag in copy constructor
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commitdiff
2007-04-19
jprocter
javadoc note on padding AlignmentAnnotation to alignmen...
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commitdiff
2007-04-19
jprocter
copying sequenceMapping, restrict(alstart/end) and...
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commitdiff
2007-04-19
amwaterhouse
REPLACE added to edit command
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commitdiff
2007-04-19
amwaterhouse
Only setDropTarget if Desktop is not null
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commitdiff
2007-04-18
amwaterhouse
Validate range for all annotations
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commitdiff
2007-04-18
amwaterhouse
Redundant code commented out
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commitdiff
2007-04-18
amwaterhouse
hastext = false
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commitdiff
2007-04-18
amwaterhouse
dont set seqref null if index incorrect
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commitdiff
2007-04-18
amwaterhouse
featureGroups not null
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commitdiff
2007-04-18
amwaterhouse
Pad gaps when annotation editing
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commitdiff
2007-04-18
amwaterhouse
quality has text false
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commitdiff
2007-04-18
amwaterhouse
Quality does not have text
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commitdiff
2007-04-18
amwaterhouse
Alignment of labels and text
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commitdiff
2007-04-18
amwaterhouse
checks for scrollbar height
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commitdiff
2007-04-18
amwaterhouse
Disable memory checker for now
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commitdiff
2007-04-18
amwaterhouse
adjustForAlignment on new seq ref
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commitdiff
2007-04-18
amwaterhouse
Check values not null in copy constructor
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commitdiff
2007-04-18
jprocter
java 1.1 compliance
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commitdiff
2007-04-17
jprocter
bugfix for jalviewApplet run from command line.
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commitdiff
2007-04-17
jprocter
bugfix.
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commitdiff
2007-04-17
jprocter
use of suffix string (filename.blc#suffixstring) to...
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commitdiff
2007-04-17
jprocter
refactored to allow seeks on a FileParse datasource...
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commitdiff
2007-04-17
jprocter
javadoc
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commitdiff
2007-04-17
jprocter
ascii type
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commitdiff
2007-04-17
jprocter
paste adds or creates full copies of objects in clipboa...
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commitdiff
2007-04-17
jprocter
pdb files are global to all alignments with new mapping...
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commitdiff
2007-04-17
jprocter
paste/cut now adds or removes associated AlignmentAnnot...
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commitdiff
2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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commitdiff
2007-04-17
jprocter
copy constructor and ascii type change.
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commitdiff
2007-04-17
jprocter
proper copy constructor (not clone)
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commitdiff
2007-04-17
amwaterhouse
Applet remembers PDBEntries, can launch multiple struct...
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commitdiff
2007-04-17
amwaterhouse
Add system.out for Mcview / Jmol detection
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commitdiff
2007-04-17
amwaterhouse
Remove system.out
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commitdiff
2007-04-16
amwaterhouse
drawSequence must be synchronized
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commitdiff
2007-04-16
amwaterhouse
Too many calls to paintAlignment
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commitdiff
2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
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commitdiff
2007-04-13
amwaterhouse
Check alignment has same sequence
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commitdiff
2007-04-12
jprocter
basic support for multi-exon CDS features
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commitdiff
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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commitdiff
2007-04-11
amwaterhouse
SetTargetColour before dialog.show
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commitdiff
2007-04-11
jprocter
fixed for display of 'null' group features
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commitdiff
2007-04-11
jprocter
fixed base lookup bug in dna pairwise alignment and...
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commitdiff
2007-04-11
amwaterhouse
Can add features with no group
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commitdiff
2007-04-11
amwaterhouse
Adjustment for hidden columns
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commitdiff
2007-04-11
amwaterhouse
Use same mouse events as scalePanel
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commitdiff
2007-04-11
amwaterhouse
Amend features/annotations in applet
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commitdiff
2007-04-11
amwaterhouse
Used several places
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commitdiff
2007-04-11
amwaterhouse
If hiddenColumns are null, then column is viisble
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commitdiff
2007-04-11
amwaterhouse
featureAdded not in applet
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commitdiff
2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settin...
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commitdiff
2007-04-05
amwaterhouse
Pasted file doesnt have title and not reloadable
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commitdiff
2007-04-05
amwaterhouse
call getAllframes on desktop instance
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commitdiff
2007-04-04
amwaterhouse
newFEatures flag for seq type
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commitdiff
2007-04-04
amwaterhouse
Use newFeatures flag
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commitdiff
2007-04-04
amwaterhouse
combobox for overlapping features
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commitdiff
2007-04-04
amwaterhouse
paintALignment
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commitdiff
2007-04-04
amwaterhouse
flag for dasCoordSysFound added
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commitdiff
2007-04-04
amwaterhouse
Throw exception if pdb result size is zero
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commitdiff
2007-04-02
jprocter
doco change.
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commitdiff
2007-04-02
jprocter
update settings for new groups (always displayed) and...
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commitdiff
2007-04-02
jprocter
bugfix + create/amend whilst feature panel open (still...
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commitdiff
2007-04-02
jprocter
typo fix.
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commitdiff
2007-04-02
amwaterhouse
Allow for scroll bar height
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commitdiff
2007-04-02
jprocter
featuresAdded method introduced for consistency with...
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commitdiff
2007-04-02
jprocter
fr==null check.
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commitdiff
2007-04-02
jprocter
feature group state and type order preference storage...
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commitdiff
2007-04-02
jprocter
featuresAdded call for transferred PDB features
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commitdiff
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