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separation of jmol script command generation from jmol binding
[jalview.git]
/
src
/
2011-05-05
jprocter
separation of jmol script command generation from jmol...
tree
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commitdiff
2011-05-05
jprocter
javadoc and informative error message when external...
tree
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commitdiff
2011-05-05
jprocter
ensure feature renderer settings come from the given...
tree
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commitdiff
2011-05-05
jprocter
added simple stdout debug function
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - additional methods to allow jmol colouring...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
tree
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commitdiff
2011-04-25
jprocter
toggle of inclusion/exclusion of views for colouring...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - ensure Jmol colouring is a radio button
tree
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commitdiff
2011-04-22
jprocter
formatting
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commitdiff
2011-04-22
jprocter
removed useless flag (was always null for button press...
tree
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commitdiff
2011-04-22
jprocter
JAL-823 and JAL-824 - seqColour no longer the default...
tree
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commitdiff
2011-04-22
jprocter
comments re JAL-823 legacy issue
tree
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commitdiff
2011-04-22
jprocter
clarify tooltip
tree
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commitdiff
2011-04-22
jprocter
moved loadingFromArchive flag modification to after...
tree
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commitdiff
2011-04-22
jprocter
option for enabling Jmol colouring mode JAL-824
tree
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commitdiff
2011-04-21
jprocter
JAL-641 patch
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-733
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-820 and JAL-821
tree
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commitdiff
2011-04-21
jprocter
separated alignment annotation height calculation from...
tree
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commitdiff
2011-04-21
jprocter
moved to same place as in jalview.gui
tree
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commitdiff
2011-04-21
jprocter
save and recover graph height, visibility and row posit...
tree
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commitdiff
2011-04-21
jprocter
allow an alignment annotation row to be removed and...
tree
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commitdiff
2011-04-21
jprocter
allow an existing alignment annotation row to be bound...
tree
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commitdiff
2011-04-21
jprocter
added graphHeight attribute to schema (JAL-784)
tree
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commitdiff
2011-04-19
jprocter
avoid race condition when featureRenderer for structure...
tree
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commitdiff
2011-04-19
jprocter
patched XML parser to ensure it properly escapes non...
tree
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commitdiff
2011-04-08
jprocter
todo
tree
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commitdiff
2011-04-08
jprocter
imported properties via -props should never be overwritten
tree
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commitdiff
2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-805
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-804
tree
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commitdiff
2011-02-28
jprocter
excess imports
tree
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commitdiff
2011-02-27
jprocter
patch for JAL-780
tree
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commitdiff
2011-02-27
jprocter
patch for occasional ArrayIndexOutOfBounds
tree
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commitdiff
2011-02-27
jprocter
patch for JAL-792
tree
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commitdiff
2011-02-27
jprocter
first patch for JAL-774 - ensure end is a valid bound...
tree
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commitdiff
2011-02-25
jprocter
first approximation for JAL-782 - hint that opaque...
tree
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commitdiff
2011-02-18
jprocter
JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
new alignmentPanel api + JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour and new alignmentPanel api
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour
tree
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commitdiff
2011-02-18
jprocter
JAL-574
tree
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commitdiff
2011-02-18
jprocter
convenience method to discover all Jmols
tree
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commitdiff
2011-02-18
jprocter
JAL-779 and some redraw refinements
tree
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commitdiff
2011-02-18
jprocter
JAl-574
tree
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commitdiff
2011-02-18
jprocter
avoid exceptions for orphaned windows
tree
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commitdiff
2011-02-18
jprocter
bugfixing for JAL-778
tree
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commitdiff
2011-02-18
jprocter
new multiple multiple view associations JAL-777
tree
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commitdiff
2011-02-18
jprocter
call to release any explicit event handler references...
tree
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commitdiff
2011-02-18
jprocter
dynamic alignmentPanel menu class
tree
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commitdiff
2011-02-18
jprocter
call to release any explicit event handler references
tree
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commitdiff
2011-02-18
jprocter
removed explicit 'linkedAlignmentPanel' flag
tree
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commitdiff
2011-02-18
jprocter
fix for occasional race conditions
tree
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commitdiff
2011-02-17
jprocter
fixes JAL-778 - flag to indicate binding between an...
tree
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commitdiff
2011-02-17
jprocter
protype api
tree
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commitdiff
2011-02-17
jprocter
classCast exception - attempting to update registry...
tree
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commitdiff
2011-02-15
jprocter
fix for JAL-776
tree
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commitdiff
2011-02-14
jprocter
JAL-769
tree
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commitdiff
2011-02-14
jprocter
JAL-564 (annotation panel height adjustment) and alignm...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 (mouseover debugging) and JAL-564 (annotation...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 and JAL-564
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-14
jprocter
refactored annotation panel height calculation
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-14
jprocter
javadoc
tree
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commitdiff
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
tree
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commitdiff
2011-02-04
jprocter
JAL-761
tree
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commitdiff
2011-02-04
jprocter
1.2ish awt methods
tree
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commitdiff
2011-02-04
jprocter
1.2ish awt methods and excluding unused code
tree
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commitdiff
2011-02-04
jprocter
don't need to retrieve idwidthadjuster
tree
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commitdiff
2011-02-04
jprocter
javadoc
tree
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commitdiff
2011-02-04
jprocter
patch for JAL-760
tree
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commitdiff
2011-02-04
jprocter
group associated annotation and logos JAL-516 JAL-759
tree
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commitdiff
2011-02-04
jprocter
adjustable annotation panel height and vertical scrollb...
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-21
jprocter
search result highlighting and scrolling and some patch...
tree
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display JAL-469
tree
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commitdiff
2011-01-21
jprocter
more efficient highlighting and selection display
tree
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commitdiff
2011-01-21
jprocter
logic bug for auto scrolling
tree
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
tree
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commitdiff
2011-01-21
jprocter
relaxed ID matching parameter JAL-753
tree
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commitdiff
2011-01-21
jprocter
ensure source is rarely null
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-18
jprocter
patch for JAL-695 - need to test if this is observed...
tree
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commitdiff
2011-01-18
jprocter
patch for JAL-695
tree
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commitdiff
2011-01-18
jprocter
javadoc
tree
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commitdiff
2011-01-18
jprocter
javadoc
tree
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commitdiff
2011-01-18
jprocter
avoid creating lots of identical search results. patch...
tree
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commitdiff
2011-01-18
jprocter
removed securityException caused by accessing class...
tree
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commitdiff
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
tree
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commitdiff
2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
tree
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commitdiff
2011-01-17
jprocter
warn user that no JS callbacks will work by default...
tree
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commitdiff
2011-01-17
jprocter
need to own lock to notify
tree
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commitdiff
2011-01-17
jprocter
need to own lock to notify
tree
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commitdiff
2011-01-17
jprocter
avoid 1.5 specific methods
tree
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commitdiff
2011-01-17
jprocter
revised default separator string expression to avoid...
tree
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commitdiff
2011-01-17
jprocter
allow debug messages to be output before jscallback...
tree
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commitdiff
2011-01-17
jprocter
refactored javascript callback to parent class.
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commitdiff
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