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JAL-2526 additional calls to sequenceChanged() after edits
[jalview.git] / src /
2017-05-16 kiramtJAL-2522 Missed fix to applet tree | commitdiff
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... tree | commitdiff
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type tree | commitdiff
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns tree | commitdiff
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 tree | commitdiff
2017-05-16 kiramtJAL-2491 Better merge tree | commitdiff
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... tree | commitdiff
2017-05-15 gmungocJAL-2532 new feature types and colour changes from... tree | commitdiff
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... tree | commitdiff
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating... tree | commitdiff
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when... tree | commitdiff
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-15 kiramtJAL-2388 Add missed optimisation tree | commitdiff
2017-05-15 kiramtJAL-2491 Better merge but not quite right yet tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... tree | commitdiff
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... tree | commitdiff
2017-05-15 kiramtJAL-2491 Tidies tree | commitdiff
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed tree | commitdiff
2017-05-15 gmungocJAL-2480 redundant code removed tree | commitdiff
2017-05-12 kiramtJAL-2491 Tidy tree | commitdiff
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... tree | commitdiff
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes tree | commitdiff
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups... tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... tree | commitdiff
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... tree | commitdiff
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet tree | commitdiff
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... tree | commitdiff
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... tree | commitdiff
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... tree | commitdiff
2017-05-12 kiramtJAL-2491 Added adjustment methods to be called directly tree | commitdiff
2017-05-12 kiramtJAL-2491 Unit test updates tree | commitdiff
2017-05-12 kiramtJAL-2491 Tweaks for applet tree | commitdiff
2017-05-11 kiramtJAL-2491 First port to applet tree | commitdiff
2017-05-11 kiramtJAL-2491 First port to applet tree | commitdiff
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... tree | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates tree | commitdiff
2017-05-10 kiramtJAL-2491 Make it work with cursor movement tree | commitdiff
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling tree | commitdiff
2017-05-10 kiramtJAL-2491 Cursor scrolling tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... tree | commitdiff
2017-05-09 kiramtJAL-2491 Tidies and more refactoring tree | commitdiff
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems tree | commitdiff
2017-05-09 tcofoegbuJAL-2465 fix to dynamically specify data source type... tree | commitdiff
2017-05-09 gmungocJAL-1632 correct i18n and NPE tree | commitdiff
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS... tree | commitdiff
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null... tree | commitdiff
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... tree | commitdiff
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... tree | commitdiff
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... tree | commitdiff
2017-05-08 gmungocJAL-2505 refactored SequenceFeature construction so... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-08 kiramtJAL-2491 More wrap corrections tree | commitdiff
2017-05-08 gmungocJAL-1632 i18n for warning messages tree | commitdiff
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... tree | commitdiff
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom... tree | commitdiff
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 tree | commitdiff
2017-05-08 kiramtJAL-2512 And applet tree | commitdiff
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... tree | commitdiff
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... tree | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling tree | commitdiff
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... tree | commitdiff
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed tree | commitdiff
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... tree | commitdiff
2017-05-04 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature tree | commitdiff
2017-05-04 gmungocJAL-2480 JAL-2505 guard against duplicating links tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... tree | commitdiff
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
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