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JAL-653 code tidy / tests for 'realise gff mappings'
[jalview.git]
/
src
/
2015-04-30
tcofoegbu
Merge branch 'bug/JAL-1717_make-pbd-id-case_insensitive...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1690 preserve scaling in New View, synch id width...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1715 implemented selection validation for the new...
tree
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commitdiff
2015-04-27
tcofoegbu
Merge branch 'features/JAL-1714_specify-mulitple-id_PDB...
tree
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commitdiff
2015-04-27
tcofoegbu
JAL-1714 improved the new PDB Sequence fetcher by enabl...
tree
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commitdiff
2015-04-27
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'features/JAL-1711_PDB-specify-chain'...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1710, JAL-1711 Bug fix for exception thrown when...
tree
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commitdiff
2015-04-24
gmungoc
JAL-1691 prevent propagation of scrolling on mouseover...
tree
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commitdiff
2015-04-24
tcofoegbu
Merge branch 'bug/JAL-1707_retrieve-pdb-structure-for...
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1707 bug fix - also search using sequence name
tree
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commitdiff
2015-04-23
gmungoc
JAL-1702 corrected check for 'no colours selected'
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 distinguish between 'font too small' and ...
tree
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commitdiff
2015-04-23
gmungoc
JAL-1681 create mappings before AlignFrame to ensure...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 set split frame divider safely for eXpand Views
tree
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commitdiff
2015-04-23
gmungoc
JAL-1706 fixed to correctly restore the last dialog...
tree
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commitdiff
2015-04-22
gmungoc
JAL-845 fix SplitFrame sizing on eXpand Views
tree
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commitdiff
2015-04-22
gmungoc
JAL-1690 fix NPE on Cancel when not in split frame
tree
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commitdiff
2015-04-21
gmungoc
JAL-1693 mappings added back to the original alignment
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1697 added ablity to select/view cached structures...
bug/JAL-1697_browse-local-structures
tree
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commitdiff
2015-04-17
tcofoegbu
Merge branch 'bug/JAL-1698_Append-Structures' into...
tree
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commitdiff
2015-04-17
tcofoegbu
JAL-1698 bug fix to enable addition of a single structu...
bug/JAL-1698_Append-Structures
tree
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commitdiff
2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'bug/Jal-1696_disable-pdb_id-field-setting...
tree
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commitdiff
2015-04-14
tcofoegbu
JAL-1696 disabled editing of PDB Id field from settings
bug/Jal-1696_disable-pdb_id-field-settings
tree
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commitdiff
2015-04-14
tcofoegbu
Merge branch 'Release_2_8_3_Branch' of https://source...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1681 work around ConcurrentModificationException...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 new property ENABLE_SPLIT_FRAME
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 parameter controls whether SplitFrame is enabled
tree
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commitdiff
2015-04-08
gmungoc
JAL-1270 protection against NullPointer when run as...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 defensive check for null
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
tree
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commitdiff
2015-03-30
gmungoc
JAL-1264 remove broken applet build dependencies
tree
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
tree
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commitdiff
2015-03-27
tcofoegbu
JAL-1667 updated the collection type for searchSummaryF...
tree
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commitdiff
2015-03-27
tcofoegbu
merge commit
tree
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commitdiff
2015-03-26
tcofoegbu
JAL-1667 updated parseJsonExceptionString method in...
features/JAL-1667_PDBe_Search_API
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-26
gmungoc
JAL-1688 compiler warnings removed
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1667 clean up commented codes in PopupMenu.java...
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1668 Tab for summary config, auto refresh after...
tree
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commitdiff
2015-03-19
tcofoegbu
JAL-1668 finally clean up
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 house keeping
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 added PDBDocFieldPreference for configuring...
tree
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commitdiff
2015-03-16
Charles Ofoegbu
JAL-1668 added validation for manual entry of pdb struc...
tree
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commitdiff
2015-03-15
Charles Ofoegbu
JAL-1667 updated test and internationalization messages
tree
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commitdiff
2015-03-09
Jim Procter
JAL-1565 loading a concise file causes insertions to...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1667 refactoring to support JAL-1668
tree
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commitdiff
2015-03-04
Charles Ofoegbu
JAL-1668 First version JAL-1668
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2015-02-27
Jim Procter
JAL-1678 - patch to make sure we only compare positions...
tree
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commitdiff
2015-02-27
Jim Procter
fix for JAL-1678
tree
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commitdiff
2015-02-26
Charles Ofoegbu
JAL-1667 PDBe Search Interface implementation
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 pass the columnselection rather then selected...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 cloned method and tested equivalence for using...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 switch to lists in SequenceGroup
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 typecast
tree
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commitdiff
2015-02-12
Jim Procter
javadoc
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 List rather than vector for sequence groups...
tree
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commitdiff
2015-02-05
Charles Ofoegbu
merge commit
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 modified jalviewFileChooser to retain default...
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 Modified JalviewFileChooser to have a more...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 added null check for sequence description...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge branch 'bug/JAL-1644_Finder-logic-improvement...
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 improvment of finder logic to include the...
tree
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commitdiff
2015-01-28
Jim Procter
JAL-1565 automatically mark query sequence as the seque...
tree
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commitdiff
2015-01-28
Jim Procter
JAL-674 patch to make Mapping.compareTransferredToR...
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
JAL-1553 added help documentation and updated Annotatio...
features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1286 don't print an exception if a non-gzip stream...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
tree
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commitdiff
next