JAL-2589 unit test updated
[jalview.git] / src /
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide...
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for...
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-27 gmungocJAL-2492 use SequenceFeatures.getNonPositionalFeatures()
2017-04-27 gmungocJAL-2480 don't allow null type in SequenceFeature
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature...
2017-04-26 kiramtJAL-2388 Tidies and unit tests
2017-04-25 kiramtJAL-2388 Missed file from previous commit
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes
2017-04-25 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles
2017-04-25 kiramtJAL-2388 And corrected OverviewCanvas for applet
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions...
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-25 tcofoegbuJAL-1648 enabled caching for Select / Hide columns...
2017-04-24 tcofoegbuJAL-1648 House keeping
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs
2017-04-24 tcofoegbuJAL-1648 added unit test for AppCache
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header...
2017-04-21 kiramtJAL-2388 Tidies
2017-04-21 kiramtJAL-2388 Make sure resizing still works
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators
2017-04-20 tcofoegbuJAL-1648 house-keeping
2017-04-20 tcofoegbuJAL-1648 house-keeping
2017-04-20 tcofoegbuJAL-2484 minor house-keeping
2017-04-20 tcofoegbuJAL-2484 minor house-keeping and code docs
2017-04-20 tcofoegbuJAL-2484 added improvement to enable clearing cache...
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning...
2017-04-20 tcofoegbuJAL-1648 refactored and improved caching architecture...
2017-04-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-19 gmungocJAL-2435 mirror font changes with middle mouse drag
2017-04-19 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-04-19 gmungocJAL-2480 cache min-max score values per sequence and...
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into
2017-04-19 gmungocJAL-2483 use SequenceFeatures to look up groups, types...
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-18 gmungocJAL-2480 subtract from total length on deleting feature
2017-04-18 gmungocJAL-2480 test coverage / bug fixes / javadoc
2017-04-18 gmungocJAL-2480 SequenceFeaturesI encapsulates features api
2017-04-17 gmungocJAL-2446 comment updates
2017-04-17 gmungocJAL-2446 promote Range from test to src to replace...
2017-04-17 gmungocJAL-2446 tidied up / generalised binary search in Featu...
2017-04-17 gmungocJAL-2446 add call to SequenceFeatures.delete(); use...
2017-04-17 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable
2017-04-12 gmungocJAL-2403 public static methods to convert distance...
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
2017-04-12 gmungocJAL-2446 getGroups, getFeatures for positional/non...
2017-04-11 tcofoegbuJAL-1648 Fix review issue - remove usage of String...
2017-04-11 gmungocJAL-2446 find feature types for one or more groups...
2017-04-11 tcofoegbuPull from develop features/JAL-2473_set-minimium-dimensions
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
2017-04-11 tcofoegbuJAL-2473 removed unused fields in JalviewDialog
2017-04-11 tcofoegbuJAL-1648 minor house keeping
2017-04-11 gmungocJAL-2446 getFeatureTypesForGroup() added
2017-04-11 gmungocJAL-2428 Javadoc
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
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