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JAL-4059 Fixed macOS timeoutscheduler and revert to --timeout for other OSes
[jalview.git] / src /
2024-04-02 Ben SoaresMerge branch 'bug/JAL-4375_annotation_not_redrawn_corre... tree | commitdiff
2024-04-02 Ben SoaresJAL-4380 Improved annotation tooltips especially second... bug/JAL-4375_annotation_not_redrawn_correctly_when_scrolling_left-right_via_trackpad_in_wrap_mode tree | commitdiff
2024-03-20 Ben SoaresMerge branch 'bug/JAL-4375_annotation_not_redrawn_corre... tree | commitdiff
2024-02-26 Ben SoaresJAL-4381 Plausibly better division of line segment... tree | commitdiff
2024-02-23 Ben SoaresJAL-4381 For lineGraph line segments that should be... tree | commitdiff
2024-02-21 Ben SoaresJAL-4375 JAL-4381 Removal of AnnotationColouring and... tree | commitdiff
2024-02-20 Ben SoaresJAL-4380 Added information to annotation tooltips when... improvement/JAL-4381_dynamic_value_colouring_of_annotations tree | commitdiff
2024-02-20 Ben SoaresJAL-4375 Add an AnnotationColouringI interface, and... tree | commitdiff
2024-02-07 Ben SoaresJAL-4375 Pass through a flag to AnnotationRenderer... tree | commitdiff
2024-02-07 Ben SoaresJAL-4375 This extra clip isn't necessary tree | commitdiff
2024-02-07 Ben SoaresJAL-4375 Clipped label text in annotations to annotatio... tree | commitdiff
2024-02-02 Ben SoaresJAL-4375 I don't think turning off antialiasing is... tree | commitdiff
2024-02-02 Ben SoaresJAL-4375 Single width pixel artifacts appearing for... tree | commitdiff
2024-02-01 Ben SoaresJAL-4375 fix typo in property name tree | commitdiff
2024-02-01 Ben SoaresJAL-4375 Improved trackpad user experience for wrapped... tree | commitdiff
2024-01-31 Ben SoaresJAL-4375 More consistent calculation for dashed thresho... tree | commitdiff
2024-01-31 Ben SoaresJAL-4375 Different way of getting mouse wheel movement... tree | commitdiff
2024-01-31 Ben SoaresJAL-4375 Fix big sideways scroll from trackpad at begin... tree | commitdiff
2024-01-31 Ben SoaresJAL-4375 Fixed sensitivity of new more responsive left... tree | commitdiff
2024-01-31 Ben SoaresJAL-4375 Fixed the following when trackpad side-scrolli... tree | commitdiff
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... tree | commitdiff
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments tree | commitdiff
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... tree | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4235_gradle_task_jalviewjsTranspi... tree | commitdiff
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... tree | commitdiff
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... tree | commitdiff
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain tree | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... tree | commitdiff
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch tree | commitdiff
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately tree | commitdiff
2023-12-20 Ben SoaresJAL-4238 Marked where JalviewJS is hanging on 3DBeacons... tree | commitdiff
2023-12-20 Ben SoaresJAL-4059 Added some more Platform.addJ2SDirectDatabaseC... tree | commitdiff
2023-12-19 Ben SoaresJAL-4290 Fixed one test tree | commitdiff
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... tree | commitdiff
2023-12-15 Ben SoaresJAL-4059 Only run this once tree | commitdiff
2023-12-15 Ben SoaresJAL-4059 Use namespaced query parameters in preference... tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... tree | commitdiff
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling tree | commitdiff
2023-12-14 Ben SoaresJAL-4059 Improvement to launch indicator tree | commitdiff
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... tree | commitdiff
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... tree | commitdiff
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... tree | commitdiff
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... tree | commitdiff
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 re-used random color code tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... tree | commitdiff
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... tree | commitdiff
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... tree | commitdiff
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... tree | commitdiff
2023-12-04 Ben SoaresJAL-4059 Attempts to set JalviewJS desktop geometry... tree | commitdiff
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport tree | commitdiff
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 tree | commitdiff
2023-11-30 Ben SoaresMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... tree | commitdiff
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... tree | commitdiff
2023-11-29 Ben SoaresMerge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv... tree | commitdiff
2023-11-29 Ben SoaresJAL-4344 Some fixes of waiting blocks, and headless... tree | commitdiff
2023-11-27 Ben SoaresJAL-4238 minor errors fixed for JalviewJS structure... tree | commitdiff
2023-11-24 Ben SoaresJAL-4059 Allow form-created querystring style values... tree | commitdiff
2023-11-23 Ben SoaresJAL-4059 Storing important thisApplet information in... tree | commitdiff
2023-11-23 Ben SoaresJAL-4059 Made jalview.bin.JalviewJS to use new command... tree | commitdiff
2023-11-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2023-11-23 Ben SoaresJAL-4059 rename vars to j2s_ this and that for clarity tree | commitdiff
2023-11-22 Ben SoaresJAL-4059 Send bespoke Info hash parameters into jalview... tree | commitdiff
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick... tree | commitdiff
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick tree | commitdiff
2023-11-21 Ben SoaresJAL-4238 an attempt to set JalviewJS desktop overflow... tree | commitdiff
2023-11-21 Ben SoaresJAL-4238 Changing visibility of locateInRange(int)... tree | commitdiff
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX... tree | commitdiff
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature... tree | commitdiff
2023-11-16 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... tree | commitdiff
2023-11-16 Ben SoaresJAL-4238 ignore thread.sleeps in jalviewjs. Added a... tree | commitdiff
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur... tree | commitdiff
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport... tree | commitdiff
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering... tree | commitdiff
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport tree | commitdiff
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console... tree | commitdiff
2023-11-15 James ProcterJAL-4090 JAL-4334 position status when start, end or... bug/JAL-4334_unknownstartenduniprotfeatures tree | commitdiff
2023-11-15 Ben SoaresJAL-3836 Allow .ext.gz files to be recognised in the... tree | commitdiff
2023-11-13 James ProcterMerge branch 'develop' into bug/JAL-4059_update_swingJS... tree | commitdiff
2023-11-13 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... tree | commitdiff
2023-11-13 Ben SoaresJAL-4059 fixed a test that is now working as expected... tree | commitdiff
2023-11-13 Ben SoaresJAL-4059 Fix the tooltip formatting for when, e.g.... tree | commitdiff
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-11-13 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... tree | commitdiff
2023-11-13 James ProcterMerge branch 'develop' into bug/JAL-4059_update_swingJS... tree | commitdiff
2023-11-13 James ProcterJAL-4236 don’t look for headers in JalviewJS tree | commitdiff
2023-11-13 James ProcterJAL-4336 set preferred dimensions for JTextBox workarou... tree | commitdiff
2023-11-13 James ProcterMerge branch 'develop' into bug/JAL-4059_update_swingJS... tree | commitdiff
2023-11-13 James ProcterJAL-4090 fix JAL-4236 - just put the name of the class... tree | commitdiff
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