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Merge branch 'patch/JAL-4232-disable-unavailable-services' into development/Release_2...
[jalview.git] / src /
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... tree | commitdiff
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... tree | commitdiff
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... tree | commitdiff
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS tree | commitdiff
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag tree | commitdiff
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... tree | commitdiff
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 class formatting tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 class reformatting tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees tree | commitdiff
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ... tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 store distances as doubles tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added tree | commitdiff
2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for... JAL-3878_ws-overhaul-3 tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into task/JAL-3991_check_actual_... tree | commitdiff
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... tree | commitdiff
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode tree | commitdiff
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web... tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka. tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task tree | commitdiff
2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name tree | commitdiff
2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java... tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly... tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 JAVA_COMPILE_VERSION put into build_properties... tree | commitdiff
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply tree | commitdiff
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add char[] constructor to Sequence tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combine... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks tree | commitdiff
2022-03-31 Ben SoaresMerge branch 'develop' into improvement/JAL-3978_add_gr... tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 formatting tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries... tree | commitdiff
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop tree | commitdiff
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog... tree | commitdiff
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE... tree | commitdiff
2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer. tree | commitdiff
2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state... tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities... tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection. tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload. tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls... tree | commitdiff
2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own... tree | commitdiff
2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details tree | commitdiff
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug tree | commitdiff
2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class tree | commitdiff
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... tree | commitdiff
2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set tree | commitdiff
2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters tree | commitdiff
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