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Merge remote-tracking branch 'origin/feature/JAL-3141_backupfiles_for211' into merge...
[jalview.git]
/
src
/
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
tree
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commitdiff
2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
tree
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commitdiff
2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
tree
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commitdiff
2019-02-22
Ben Soares
JAL-3141 improved message for asking whether to delete...
tree
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commitdiff
2019-02-21
Ben Soares
JAL-3141 Sensible refactoring for confirming deleting...
tree
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commitdiff
2019-02-17
Ben Soares
JAL-3141 User warning when deleting old backup files...
tree
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commitdiff
2019-02-15
Ben Soares
JAL-3141 re-order deletion of old files and check lastM...
tree
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commitdiff
2019-02-14
Ben Soares
JAL-3141 Added warning/confirmation when suffixReverse...
tree
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commitdiff
2019-02-14
Ben Soares
JAL-3141 Moved 'Previously saved scheme' combo box...
tree
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commitdiff
2019-02-01
Ben Soares
JAL-3141 Slight efficiency gain in detecting backupfile...
tree
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commitdiff
2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a good fix for updating the FileChooser...
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a (not ideal) fix for updating the FileC...
tree
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commitdiff
2019-01-28
Ben Soares
JAL-3141 improvement on BackupFilenameParts filename...
tree
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commitdiff
2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Added a '.fa' to filename examples
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Change of label
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Removed border around example filenames in...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 New layout and wording of Backups Preferences...
tree
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commitdiff
2019-01-24
gmungoc
JAL-3018 Ensembl version updated to 9.0
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
tree
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commitdiff
2019-01-23
Ben Soares
JAL-3141 Added Presets options in the Backups Preferenc...
tree
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commitdiff
2019-01-23
gmungoc
JAL-3063 correct handling of absent choice element...
tree
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commitdiff
2019-01-22
Ben Soares
JAL-3141 Fixed what happens when suffix template has...
tree
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commitdiff
2019-01-21
Ben Soares
JAL-3141 Rejigged the Preferences tab and changed some...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 removing diagnostic output
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Fixed example filenames in Preferences pane...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Re-added some changes in Jalview2XML missed...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2019-01-16
Ben Soares
JAL-3141 Remove no longer used exampleLabel
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2019-01-15
Jim Procter
JAL-1767 refactor associated view logic to public metho...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Forgot this file, sorry!
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Added a 'Save Project as...' File menu item...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Made more constants
tree
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commitdiff
2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 removed redundant method to tests
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into features/pca_j...
tree
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commitdiff
2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2019-01-09
Jim Procter
JAL-3063 remove stale JAXB binding POJO
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Added i18n for the example filenames in Prefer...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 forgot to add this file after extracting the...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Made one more suggested change from code review
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some more suggested changes from code...
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
tree
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commitdiff
2018-12-21
gmungoc
JAL-1767 minimise local variable scope
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
tree
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
tree
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commitdiff
2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
tree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
tree
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commitdiff
2018-10-23
Ben Soares
BackupFilter and other unfinished business
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
tree
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commitdiff
2018-10-22
Ben Soares
JAL-3141 Tidying
tree
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commitdiff
2018-10-19
Ben Soares
JAL-3141 Backup files being created with default suffix...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
tree
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commitdiff
2018-09-24
gmungoc
JAL-3063 tidy commented out code
tree
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commitdiff
2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
tree
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commitdiff
2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
tree
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commitdiff
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