2018-01-30 |
kiramt | JAL-2759 Additional tests and tweaks to numColumns... |
tree | commitdiff |
2018-01-30 |
kiramt | JAL-2759 Keep numColumns up to date |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 remove unneeded cast |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 Combine findRegionForColumn code in HiddenColu... |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 numColumns reset |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 remove redundant hiddenColumns.clear() |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 Tidy |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 make a new cursor instead of resetting, update... |
tree | commitdiff |
2018-01-29 |
kiramt | JAL-2759 Fix unintended type change |
tree | commitdiff |
2018-01-29 |
gmungoc | JAL-2743 recoded EnsemblLookup without lambda expressio... |
tree | commitdiff |
2018-01-26 |
kiramt | JAL-2778 try another way to draw sequences with reduced... |
tree | commitdiff |
2018-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2018-01-26 |
kiramt | JAL-2778 tightened up use of resetAlignmentDims |
tree | commitdiff |
2018-01-25 |
kiramt | JAL-2778 Tidy |
tree | commitdiff |
2018-01-25 |
kiramt | JAL-2778 added JAL-2851 fix to avoid confusion |
tree | commitdiff |
2018-01-25 |
kiramt | JAL-2778 Reinstate id width adjuster |
tree | commitdiff |
2018-01-22 |
kiramt | JAL-2579 Moved locateVisibleStartOfSequence to Sequence... |
tree | commitdiff |
2018-01-22 |
kiramt | JAL-2759 Various minor HiddenColumns updates after... |
tree | commitdiff |
2018-01-19 |
kiramt | JAL-2759 Changes to getVisibleSequenceStrings after... |
tree | commitdiff |
2018-01-19 |
kiramt | JAL-2759 Moved propagateInsertions out of HiddenColumns |
tree | commitdiff |
2018-01-19 |
kiramt | JAL-2759 Update to getVisibleStartAndEndIndex after... |
tree | commitdiff |
2018-01-18 |
kiramt | JAL-2759 change subtractVisibleColumns and removal... |
tree | commitdiff |
2018-01-18 |
gmungoc | JAL-2810 JAL-2886 i18n |
tree | commitdiff |
2018-01-18 |
gmungoc | JAL-2679 update query id to actual case of retrieved... |
tree | commitdiff |
2018-01-18 |
kiramt | JAL-2759 Updated test |
tree | commitdiff |
2018-01-18 |
kiramt | JAL-2759 unit tests (incomplete) |
tree | commitdiff |
2018-01-17 |
gmungoc | JAL-2679 case-insensitive comparison of query and retri... |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2679 use object_type=Transcript for lookup of Paren... |
tree | commitdiff |
2018-01-16 |
kiramt | JAL-2759 setup hideBitSet over range for hideInsertions |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-1270 JAL-2885 clear properties before load |
tree | commitdiff |
2018-01-16 |
kiramt | JAL-2759 Moved alignment annotation code out of HiddenC... |
tree | commitdiff |
2018-01-16 |
kiramt | JAL-2759 Replaced StringBuffer with StringBuilder;... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 More compact iterator usage; after review |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 First pass instantiate hiddenColumns collectio... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 getVisContigsIterator returns VisibleContigsIt... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Rename hideInsertionsFor to hideList, after... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Refactor of hideInsertionsFor after review |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Simplified HiddenColumns constructor after... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Changed VisibleColsCollection constructor... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Minor doc and naming changes |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Updated absoluteToVisibleColumn doc (prev... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Rename findColumnPosition and adjustForHiddenC... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Comments and renaming for has(Many)HiddenColum... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Update to getHiddenBoundaryRight + unit test... |
tree | commitdiff |
2018-01-15 |
kiramt | JAL-2759 Updates following review |
tree | commitdiff |
2018-01-10 |
gmungoc | JAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC |
tree | commitdiff |
2018-01-10 |
gmungoc | JAL-1793 update spike branch to latest |
tree | commitdiff |
2018-01-10 |
gmungoc | JAL-2791 ignore feature type visibility in getColor() |
tree | commitdiff |
2018-01-09 |
gmungoc | JAL-2843 unit tests for Save/Load colours and filters... |
tree | commitdiff |
2018-01-09 |
gmungoc | JAL-2808 small tweaks to api / Javadoc |
tree | commitdiff |
2018-01-08 |
gmungoc | JAL-2069 fix setting initial value of slider from threshold |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2843 missed Castor class |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2843 save/restore colour feature by attribute,... |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2879 save/restore feature sub-attributes in Jalview... |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2843 missed Castor class |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2843 and Castor metadata file for latest changes |
tree | commitdiff |
2017-12-14 |
gmungoc | JAL-2843 schema and code changes to save colour by... |
tree | commitdiff |
2017-12-13 |
gmungoc | JAL-2843 add isByAttribute to interface for convenience |
tree | commitdiff |
2017-12-11 |
gmungoc | JAL-2843 add colour by attribute, and no value colour... |
tree | commitdiff |
2017-12-08 |
gmungoc | JAL-2843 read/write feature filters from/to Jalview... |
tree | commitdiff |
2017-12-08 |
gmungoc | JAL-2843 refactor / tidy for feature filter input/output |
tree | commitdiff |
2017-12-08 |
gmungoc | JAL-2843 methods relocated |
tree | commitdiff |
2017-12-08 |
gmungoc | JAL-2843 toStableString, fromString for Jalview feature... |
tree | commitdiff |
2017-12-08 |
gmungoc | JAL-2843 FeatureRenderer.getFeatureFilters returns... |
tree | commitdiff |
2017-12-05 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2808 JAL-2850 update spike build to latest |
tree | commitdiff |
2017-12-04 |
gmungoc | Merge branch 'spikes/mungo' into features/JAL-1793VCF |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence refere... |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2845 locate reverse strand insertion as complement... |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2835 small refactor to only extract transcript... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2835 spike updated to latest (use specific SO term... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2835 refactored to extract specific consequence... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2792 sort feature attributes for output, not for... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2835 additional sub-terms of sequence_variant added |
tree | commitdiff |
2017-11-30 |
gmungoc | JAL-2850 improved use of htsjdk api to read contig... |
tree | commitdiff |
2017-11-30 |
gmungoc | JAL-1766 additional tests for stub htsjdk wrapper |
tree | commitdiff |
2017-11-30 |
Jim Procter | JAL-2849 JAL-2863 file format preferences TODO
|
tree | commitdiff |
2017-11-30 |
Jim Procter | JAL-2849 fix |
tree | commitdiff |
2017-11-28 |
Jim Procter | Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into... |
tree | commitdiff |
2017-11-28 |
Jim Procter | Merge branch 'bug/JAL-2740' into develop |
tree | commitdiff |
2017-11-28 |
Jim Procter | Merge branch 'bug/JAL-2827' into develop |
tree | commitdiff |
2017-11-28 |
Jim Procter | Merge branch 'bug/JAL-2842' into develop |
tree | commitdiff |
2017-11-28 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-11-28 |
gmungoc | JAL-2850 MapList.isToForwardStrand added |
tree | commitdiff |
2017-11-27 |
Jim Procter | JAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid |
tree | commitdiff |
2017-11-27 |
gmungoc | JAL-2850 VCFLoader refactored to load VCF to contig... |
tree | commitdiff |
2017-11-24 |
gmungoc | JAL-2808 update spike to latest |
tree | commitdiff |
2017-11-24 |
gmungoc | JAL-2808 refactoring to better handler filter by Score... |
tree | commitdiff |
2017-11-24 |
gmungoc | JAL-2808 relocate constants for compiler, add COLUMN_CO... |
tree | commitdiff |
2017-11-24 |
gmungoc | JAL-2808 refine FeatureMatcher interface and matcher... |
tree | commitdiff |
2017-11-24 |
gmungoc | JAL-2808 don't cache i18n - MessageManager already... |
tree | commitdiff |
2017-11-23 |
gmungoc | JAL-2808 update spike to latest (filter range tooltip... |
tree | commitdiff |
2017-11-23 |
gmungoc | JAL-2808 refactor KeyedMatcher as FeatureMatcher with... |
tree | commitdiff |
2017-11-23 |
gmungoc | JAL-2808 update spike to latest (filter range, Present... |
tree | commitdiff |
2017-11-23 |
gmungoc | JAL-2808 removed field filters; sort CSQ data by key |
tree | commitdiff |
2017-11-23 |
gmungoc | JAL-2808 added conditions Present, NotPresent as options |
tree | commitdiff |
2017-11-23 |
kiramt | Merge branch 'develop' into bug/JAL-2851 bug/JAL-2851 |
tree | commitdiff |
next |