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renamed menu for jPred to Jnet.
[jalview.git]
/
src
/
2005-06-16
jprocter
renamed menu for jPred to Jnet.
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commitdiff
2005-06-16
jprocter
better clustalw reference
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commitdiff
2005-06-16
amwaterhouse
dont add sequence twice to new group
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commitdiff
2005-06-16
amwaterhouse
Sort Groups modified
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commitdiff
2005-06-16
amwaterhouse
dont convert to uppercase
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commitdiff
2005-06-16
amwaterhouse
textarea replaces textfield - can cut and paste sequenc...
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commitdiff
2005-06-16
amwaterhouse
remove gaps applies to selected area
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commitdiff
2005-06-15
amwaterhouse
use .jalview.uniprot.xml
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commitdiff
2005-06-15
amwaterhouse
Check colours not null
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commitdiff
2005-06-15
amwaterhouse
check colourscheme is not null
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commitdiff
2005-06-15
amwaterhouse
paintrefresher
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commitdiff
2005-06-15
amwaterhouse
add/remove updated
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commitdiff
2005-06-15
amwaterhouse
Column selection changed
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commitdiff
2005-06-15
amwaterhouse
REmove commented out lines
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commitdiff
2005-06-15
amwaterhouse
allow for fastpaint
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commitdiff
2005-06-15
amwaterhouse
add / remove editable columns
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commitdiff
2005-06-15
amwaterhouse
Tooltip changed
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commitdiff
2005-06-14
amwaterhouse
change name of uniprot file
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commitdiff
2005-06-14
amwaterhouse
add version
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commitdiff
2005-06-14
amwaterhouse
remove system.out
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commitdiff
2005-06-14
jprocter
pad-1 gaps fixed.
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commitdiff
2005-06-14
jprocter
slight modification to srs query so it takes both unipr...
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commitdiff
2005-06-14
jprocter
Arbitrary decision to keep friendly id name when readin...
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commitdiff
2005-06-14
amwaterhouse
update conservation colours after edit
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commitdiff
2005-06-14
amwaterhouse
ToolTip updated
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commitdiff
2005-06-14
amwaterhouse
add value to conservation mouseover
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commitdiff
2005-06-14
amwaterhouse
if seq is null, dont check pdb
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commitdiff
2005-06-14
amwaterhouse
mouse pressed moved to mouseclicked
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commitdiff
2005-06-14
amwaterhouse
Deselect sets annotationPanel activeres null
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commitdiff
2005-06-14
amwaterhouse
reset if clustalX colouring
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commitdiff
2005-06-14
amwaterhouse
Dont delete nextSeq
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commitdiff
2005-06-14
amwaterhouse
PaintRefresher must be sent alignment
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commitdiff
2005-06-14
amwaterhouse
super.paintComponent
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commitdiff
2005-06-14
amwaterhouse
Set background colour of applet RGB
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commitdiff
2005-06-14
amwaterhouse
protected now public
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commitdiff
2005-06-14
amwaterhouse
Double click to launch file browser
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commitdiff
2005-06-14
amwaterhouse
tooltips instant (hopefully)
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commitdiff
2005-06-14
amwaterhouse
No spaces allowed in sequence name
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commitdiff
2005-06-14
amwaterhouse
Load/Save trees
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commitdiff
2005-06-14
amwaterhouse
Returns TreePanel when opening Newick
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commitdiff
2005-06-14
amwaterhouse
Saves trees
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commitdiff
2005-06-13
jprocter
null pointer fix.
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commitdiff
2005-06-13
amwaterhouse
uses paintrefresher
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commitdiff
2005-06-13
amwaterhouse
clustal probs
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commitdiff
2005-06-13
amwaterhouse
quit saves screen size
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commitdiff
2005-06-13
amwaterhouse
Updates checkboxes on load
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commitdiff
2005-06-13
amwaterhouse
PaintRefresh changed
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commitdiff
2005-06-13
amwaterhouse
protected now public
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commitdiff
2005-06-13
amwaterhouse
Quit actionPerformed
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commitdiff
2005-06-13
amwaterhouse
Get colourScheme with seqs and width
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commitdiff
2005-06-10
amwaterhouse
SeqFetcher modified
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commitdiff
2005-06-10
amwaterhouse
remove imports
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commitdiff
2005-06-10
amwaterhouse
Fastpaint is false initially
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commitdiff
2005-06-10
jprocter
added logs.Castor.level
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commitdiff
2005-06-10
jprocter
added castor logger configuration.
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commitdiff
2005-06-10
amwaterhouse
Remove imports
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commitdiff
2005-06-10
amwaterhouse
set conservation/consensus in constructor
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commitdiff
2005-06-10
jprocter
removed exception name from server error state (to...
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commitdiff
2005-06-09
amwaterhouse
needed for applet search
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commitdiff
2005-06-09
amwaterhouse
Monospaced
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commitdiff
2005-06-09
amwaterhouse
Warn if Textarea limit has been reached
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commitdiff
2005-06-08
amwaterhouse
replace space
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commitdiff
2005-06-08
amwaterhouse
group recalc conserve
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commitdiff
2005-06-08
amwaterhouse
recalc group conserve
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commitdiff
2005-06-08
amwaterhouse
if missing forward slash
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commitdiff
2005-06-08
amwaterhouse
Recalc accelerated
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commitdiff
2005-06-08
amwaterhouse
Sets sequence features
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-08
amwaterhouse
*** empty log message ***
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commitdiff
2005-06-08
amwaterhouse
Add email to about
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commitdiff
2005-06-07
jprocter
added a couple of debug statements for unix browser...
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commitdiff
2005-06-06
amwaterhouse
closes if accepted
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commitdiff
2005-06-05
jprocter
made error for browser configuration on unix a bit...
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commitdiff
2005-06-05
jprocter
firefox now default for unixen.
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commitdiff
2005-06-05
jprocter
more subtle rearrangements
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commitdiff
2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
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commitdiff
2005-06-02
jprocter
tidied the exceptions and ws server error behaviour
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commitdiff
2005-06-02
amwaterhouse
Warn if URL not found
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commitdiff
2005-06-02
amwaterhouse
Cut and paste changed
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commitdiff
2005-06-02
amwaterhouse
Reverse order for windows, readin from url
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commitdiff
2005-06-02
amwaterhouse
startup file is jalview.org
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commitdiff
2005-06-02
amwaterhouse
Name of xml file changed
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commitdiff
2005-06-02
amwaterhouse
Check startup file is not null
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commitdiff
2005-06-02
jprocter
minor changes to make jalopy happy
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commitdiff
2005-06-02
jprocter
minor changes to try and make jalopy happy
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commitdiff
2005-05-31
jprocter
Moved comment so it doesn't break jalopy (this is not...
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commitdiff
2005-05-30
jprocter
Changed sortByPID to use the gapped PID function.
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commitdiff
2005-05-30
jprocter
comments
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commitdiff
2005-05-30
jprocter
Added clustalW 'realignment' (primitive)
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commitdiff
2005-05-30
jprocter
added default ClustalWS or MuscleWS to remove gaps.
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commitdiff
2005-05-30
jprocter
propagated use of jalview.util.GapChars for gap removal.
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commitdiff
2005-05-30
jprocter
more robust parsing for DBset/DBname|id1|id2 type ids
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commitdiff
2005-05-30
jprocter
modified history for redundancy removal.
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commitdiff
2005-05-30
jprocter
fixed stacktrace potential for pairwise alignment action.
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commitdiff
2005-05-30
jprocter
Modified output on stdout for similarity matrix.
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commitdiff
2005-05-27
jprocter
fixed brain interruption bug.
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commitdiff
2005-05-27
amwaterhouse
ignores blank lines read in and write out
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commitdiff
2005-05-27
jprocter
right ordering for RedundancyPanel constructor
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commitdiff
2005-05-27
jprocter
added proper state check for failedJob flag.
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commitdiff
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git://source.jalview.org / jalview.git / history