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Merge branch 'JAL-686' into develop
[jalview.git] / src /
2013-08-30 darolmari18n date/time handling tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... tree | commitdiff
2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into develop tree | commitdiff
2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads... tree | commitdiff
2013-08-27 Daniel BartonMerge remote-tracking branch 'origin/Release_2_8_1_Bran... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... tree | commitdiff
2013-08-27 Jim ProcterMerge branch 'JAL-1332_regression' into develop tree | commitdiff
2013-08-27 Jim ProcterJAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22... tree | commitdiff
2013-08-27 Jim ProcterJAL-1332 - defer SSM provision to root provider for... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 Just the eclipse project/classpath files so... tree | commitdiff
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... tree | commitdiff
2013-07-12 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment... tree | commitdiff
2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is... tree | commitdiff
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consen... tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 refactor logic for setting display flags for... tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to... tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into develop tree | commitdiff
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the... tree | commitdiff
2013-07-07 Jim ProcterJAL-1332 make SSM context discovery safer (particularly... tree | commitdiff
2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construc... tree | commitdiff
2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into Release_2_8_Branch tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 update alignment state for annotation edits... tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 proxy method for synchronising internal Alignm... tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 simplify initialisation of consensus, conserva... tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into Release_2_8_Branch tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop tree | commitdiff
2013-06-23 Jim ProcterMerge commit '72c628b' into develop tree | commitdiff
2013-06-23 Jim ProcterMerge commit '72c628b' into Release_2_8_Branch tree | commitdiff
2013-06-22 Jim ProcterMerge branch 'feature/JAL-1330' into develop tree | commitdiff
2013-06-22 Jim ProcterJAL-1330 pick primary seqeunce data source for authorit... tree | commitdiff
2013-06-21 Jim ProcterJAL-1230 comment unused code to avoid NPE tree | commitdiff
2013-06-21 Jim ProcterJAL-1327 TODO tree | commitdiff
2013-06-21 Jim ProcterJAL-1326 JAL-1327 update all graphline thresholds with... tree | commitdiff
2013-06-21 Jim ProcterJAL-1241 - generate colour for all annotation values... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF... tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota... tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 bugfix equals tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1127 set option widgets to service defaults only... tree | commitdiff
2013-06-19 Jim ProcterJAL-1240 avoid NPE when source has no proxy available tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 ascending alphabetical order tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 preserve option/parameter order with LinkedHashMap tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 sort options and parameters according to their... tree | commitdiff
2013-06-18 Jim Proctertypo tree | commitdiff
2013-06-18 Jim ProcterJAL-1321 don't show a tooltip for empty strings tree | commitdiff
2013-06-18 Jim ProcterJAL-674 fix the mapping generation algorithm tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'menard' into develop_m2_8_1_2 tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-18 Jim ProcterJAL-674 - avoid java.util.ConcurrentModificationExcepti... tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1319_jronn_npe' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1319 (blacklist fix) check for presence of a score... tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1027 fix errors in alternative codon table tree | commitdiff
2013-06-17 Jim ProcterJAL-1027 use alternative codon table in ResidueProperti... tree | commitdiff
2013-06-17 Jim ProcterJAL-1035 option to allow 'STOP' codon to translate... tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 patch for regression noticed after patch to... tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 rewrite of code for first reported exception... tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 more helpful error message when translation... tree | commitdiff
2013-06-17 Jim ProcterJAL-529 - IUBMB nucleotide ambiguity codes and programm... tree | commitdiff
2013-06-17 Jim ProcterJAL-1318 - route warnings to stderr (need to find a... tree | commitdiff
2013-06-17 Jim ProcterJAL-1318 avoid failure if SequenceI objects don't have... tree | commitdiff
2013-06-17 Jim ProcterJAL-966 avoid using java.util.Vector tree | commitdiff
2013-06-14 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-14 Jim ProcterMerge branch 'JAL-1316' into develop tree | commitdiff
2013-06-14 Jim ProcterJAL-1316 compact '' to ' tree | commitdiff
2013-06-14 Jim ProcterJAL-1316 recognise and extract quoted region as nodename tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'JAL-1314_headlessFlag' into develop tree | commitdiff
2013-06-13 Jim ProcterJAL-1314 allow 'nogui' and 'headless' as synonyms for... tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'JAL-1315_headlessEPS' into develop tree | commitdiff
2013-06-13 Jim Procterfix for JAL-1315 tree | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-09 Jim ProcterJAL-674 avoid runtime dependency on annotate3d webservi... tree | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-09 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-09 Jim Procterfix for JAL-1298 tree | commitdiff
2013-06-09 Jim ProcterJAL-715 - TODO tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-07 Jim ProcterJAL-1309 fix broken partition computation for adding... tree | commitdiff
2013-06-07 Jim ProcterJAL-945 uniquify prior to submission tree | commitdiff
2013-06-07 Jim Procterformatting tree | commitdiff
2013-06-07 Jim ProcterJAL-715 allow headless construction for testing tree | commitdiff
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