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JAL-1830 refactored so no jalview.gui references from jalview.structure
[jalview.git] / src /
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from... tree | commitdiff
2015-08-27 gmungocJAL-845 compacting duplicated code tree | commitdiff
2015-08-27 gmungocJAL-1611 debug sysout suppressed tree | commitdiff
2015-08-27 gmungocJAL-1544 message label corrected tree | commitdiff
2015-08-27 gmungocJAL-1725 restrict Jalview's Jetty server to localhost tree | commitdiff
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... tree | commitdiff
2015-08-26 gmungocJAL-1596 check for null pointer (thread running after... tree | commitdiff
2015-08-26 gmungocJAL-1840 correct setting status bar for structure mouseover tree | commitdiff
2015-08-26 gmungocJAL-1759 added check for null (console 'history') tree | commitdiff
2015-08-26 gmungocFix to use correct resource bundle entry tree | commitdiff
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback... tree | commitdiff
2015-08-25 gmungocJAL-1780 just a spelling change tree | commitdiff
2015-08-25 gmungocJAL-1674 more correct status bars in splitframe mouseov... tree | commitdiff
2015-08-24 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-08-24 gmungocJAL-1759 removed trim() of Atom.resNumIns as not backwa... tree | commitdiff
2015-08-24 tcofoegbuJAL-1641 externalised save_as_biojs_html tree | commitdiff
2015-08-24 tcofoegbumerge tree | commitdiff
2015-08-24 tcofoegbuJAL-1834 removed quotes around truncated strings with... tree | commitdiff
2015-08-24 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-08-24 gmungocJAL-845 error message on syserr if supplied files don... tree | commitdiff
2015-08-24 gmungocremove mentions of non-functional RNAInteraction colour... tree | commitdiff
2015-08-21 tcofoegbuJAL-1834 capped the tool-tip text at 500. once that... tree | commitdiff
2015-08-21 tcofoegbuJAL-1834 disabled action buttons (Back / Ok / Cancel... tree | commitdiff
2015-08-21 tcofoegbuJAL-1443 bug fix for loading pasted alignments from... tree | commitdiff
2015-08-21 tcofoegbuJAL-1831 updated json schema doc tree | commitdiff
2015-08-21 tcofoegbuclean up tree | commitdiff
2015-08-21 tcofoegbuJAL-1780 made the 'Select All' checkbox to be shown... tree | commitdiff
2015-08-21 tcofoegbuJAL-1780 changed 'Check All' to 'Select All' and extern... tree | commitdiff
2015-08-20 tcofoegbumerge tree | commitdiff
2015-08-20 tcofoegbuJAL-1833 revised implementation tree | commitdiff
2015-08-20 gmungocJAL-1833 added unit tests (some failing) for wrapToolitp tree | commitdiff
2015-08-19 gmungocJAL-1725 log to sysout when listener shuts down tree | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... tree | commitdiff
2015-08-18 tcofoegbuJAL-1861 bugfix to allow parsing of stockholm files... tree | commitdiff
2015-08-18 tcofoegbuJAL-1835 added UI for BioJSON embbeding preference tree | commitdiff
2015-08-18 tcofoegbuJAL-1835 made BioJSON embedding to html exports configu... tree | commitdiff
2015-08-18 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-08-18 tcofoegbuJAL-1834 added tooltip to the PDB sequence fetcher... tree | commitdiff
2015-08-18 tcofoegbuJAL-1833 modified tooltip to force wraping of long... tree | commitdiff
2015-08-17 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-08-17 gmungocJAL-1800 separated SearchResults.getCharacters() from... tree | commitdiff
2015-08-17 tcofoegbumerge tree | commitdiff
2015-08-17 tcofoegbuJAL-1832 improvement to enable result update only when... tree | commitdiff
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ... tree | commitdiff
2015-08-17 gmungocJAL-1800 smarter matching when following mouseover... tree | commitdiff
2015-08-17 gmungocJAL-1691 scan full width and depth of alignment for... tree | commitdiff
2015-08-17 gmungocJAL-1800 SearchResults.equals() to allow smarter mouseo... tree | commitdiff
2015-08-17 tcofoegbuJAL-1831 update all maxItems annotation to the max... tree | commitdiff
2015-08-14 tcofoegbuJAL-1831 added changes to allow auto-generation of... tree | commitdiff
2015-08-13 tcofoegbuJAL-1826 bug fix to select pdb sequence fetcher via... tree | commitdiff
2015-08-13 tcofoegbuJAL-1641 added type to BioJSON sequence object and... tree | commitdiff
2015-08-11 tcofoegbumerge tree | commitdiff
2015-08-11 tcofoegbuadd ability to launch jalview from exported html +... tree | commitdiff
2015-08-10 Jim ProcterMerge branch 'release/2_9_documentation' into develop tree | commitdiff
2015-08-10 Jim ProcterJAL-736 relocate group associated conservation symbols... tree | commitdiff
2015-08-10 Jim ProcterJAL-736 source formatting tree | commitdiff
2015-08-10 tcofoegbuJAL-1486 fixed flatfile output of visible region for... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-08-06 tcofoegbumerge tree | commitdiff
2015-08-06 tcofoegbuJAL-1824 corrected copy'n'paste error introduced from... tree | commitdiff
2015-08-05 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 formatting tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 launch the structure view in a separate thread... tree | commitdiff
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread... tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 JAL-1759 make sure we wait around until the... tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number... tree | commitdiff
2015-08-04 tcofoegbuJAL-1816 fixed bug in identify file preventing it from... tree | commitdiff
2015-08-04 tcofoegbuJAL-1821 updated implementation of launchStructureViewe... tree | commitdiff
2015-08-04 tcofoegbuupdated the reference sequence column of cached structu... tree | commitdiff
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures... tree | commitdiff
2015-07-30 tcofoegbuJAL-1443 modified exception notifications tree | commitdiff
2015-07-30 tcofoegbuJAL-1710 filtered colons(:) from structure chooser... tree | commitdiff
2015-07-29 tcofoegbuJAL-1821 discarded sequence name truncation in summary... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1759 formatting
 tree | commitdiff
2015-07-23 Jim ProcterJAL-1759 reinstate changes from bdfde6ef989da0702cef90f... tree | commitdiff
2015-07-23 Jim ProcterJAL-1759 formatting tree | commitdiff
2015-07-23 tcofoegbuResolved merge conflict in EdtiCommandTest.java tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-23 tcofoegbuJAL-1819 Test cases for Identify file tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'bug/JAL-1819_isNaN' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 commented out debugging message to stderr bug/JAL-1819_isNaN tree | commitdiff
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-21 tcofoegbuMerge tree | commitdiff
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable... tree | commitdiff
2015-07-21 Jim ProcterMerge branch 'ismb/2015_demo' into develop tree | commitdiff
2015-07-16 Jim Procterrevision for JAL-1749 - ensure view 2D structure menu... tree | commitdiff
2015-07-15 gmungocJAL-1813 only pair up A-Z with a-z if annotation is RNA tree | commitdiff
2015-07-13 tcofoegbuJAL-1788 added help documentation for biojson tree | commitdiff
2015-07-10 tcofoegbuJAL-1759 code fix to enable testng ant task compile... tree | commitdiff
2015-07-09 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-07-09 tcofoegbuJAL-1806 bug fix to loop through the entire data file... tree | commitdiff
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-08 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-07-08 gmungocJAL-1598 replaced faulty regex, amended Varna call... tree | commitdiff
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