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JAL-3383 removing colour caching (to a separate branch)
[jalview.git]
/
src
/
2019-03-01
gmungoc
JAL-3140 reduced coupling to intervalstore.jar
feature/intervalStoreJ
tree
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commitdiff
2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'bug/JAL-2420revealAllMenu' into develop
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into merge...
tree
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commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
tree
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commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
tree
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commitdiff
2019-02-28
gmungoc
JAL-3032 any url parameter not "j2s..." taken as Jalvie...
Jalview-BH/JAL-3026-JAL-3063-JAXB
tree
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commitdiff
2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
tree
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commitdiff
2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
tree
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commitdiff
2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 JAL-2386 don't pre-select 'apply to all groups'
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
tree
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commitdiff
2019-02-25
gmungoc
JAL-3032 Jalview (as JS) parse query params to main...
tree
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commitdiff
2019-02-25
gmungoc
JAL-3032 JalviewJS2 converts url query parameters to...
tree
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commitdiff
2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
tree
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commitdiff
2019-02-22
Ben Soares
JAL-3141 improved message for asking whether to delete...
tree
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commitdiff
2019-02-21
Ben Soares
JAL-3141 Sensible refactoring for confirming deleting...
tree
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commitdiff
2019-02-17
Ben Soares
JAL-3141 User warning when deleting old backup files...
tree
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commitdiff
2019-02-15
Ben Soares
JAL-3141 re-order deletion of old files and check lastM...
tree
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commitdiff
2019-02-14
Ben Soares
JAL-3141 Added warning/confirmation when suffixReverse...
tree
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commitdiff
2019-02-14
Ben Soares
JAL-3141 Moved 'Previously saved scheme' combo box...
tree
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commitdiff
2019-02-12
gmungoc
JAL-3032 default Autosearch to off for JalviewJS
tree
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commitdiff
2019-02-05
gmungoc
JAL-3032 check enough sequences selected on construction
tree
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commitdiff
2019-02-05
gmungoc
JAL-3048 JS-compatible confirm dialog on delete all
tree
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commitdiff
2019-02-04
hansonr
SequenceFetcher JvCacheableInputBox isJS test
tree
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commitdiff
2019-02-04
hansonr
refactoring for DBMODList
tree
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commitdiff
2019-02-04
hansonr
adds protype size to JTextArea hack for nonexistent...
tree
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commitdiff
2019-02-04
hansonr
fixing array processing order
tree
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commitdiff
2019-02-04
hansonr
re-transpiled MIGLayout; JS-adapted AnnotationColumnChooser
tree
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commitdiff
2019-02-01
hansonr
removes unnecessary org.xml.sax; these are in SwingJS
tree
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commitdiff
2019-02-01
Ben Soares
JAL-3141 Slight efficiency gain in detecting backupfile...
tree
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commitdiff
2019-01-31
hansonr
Split pane removing title bar for JInternalFrames
tree
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commitdiff
2019-01-30
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of
tree
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commitdiff
2019-01-30
gmungoc
JAL-3144 don't change comma to semi-colon if not requested!
tree
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commitdiff
2019-01-30
hansonr
woops.
tree
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commitdiff
2019-01-30
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
tree
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commitdiff
2019-01-30
hansonr
fixes unidentified Java problem
tree
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commitdiff
2019-01-30
gmungoc
JAL-3056 no export as BioJS in JalviewJS
tree
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commitdiff
2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
tree
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commitdiff
2019-01-29
hansonr
JSON writing fix, JColorChooser (mnemonic change) fix
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a good fix for updating the FileChooser...
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a (not ideal) fix for updating the FileC...
tree
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commitdiff
2019-01-29
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
tree
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commitdiff
2019-01-29
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into trialMerge
tree
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commitdiff
2019-01-29
gmungoc
JAL-3143 format alleles array for feature description
tree
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commitdiff
2019-01-29
hansonr
iterators
tree
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commitdiff
2019-01-29
hansonr
time check, iterators
tree
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commitdiff
2019-01-29
hansonr
JSON moved to swingjs/json
tree
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commitdiff
2019-01-29
hansonr
JSON code moved to swingjs.json.JSON
tree
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commitdiff
2019-01-29
hansonr
more iterators out; some time checks
tree
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commitdiff
2019-01-28
gmungoc
JAL-3032 revert change to tooltip StringBuilder length
tree
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commitdiff
2019-01-28
Ben Soares
JAL-3141 improvement on BackupFilenameParts filename...
tree
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commitdiff
2019-01-26
hansonr
Platform.timecheck calls removed or commented out.
tree
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commitdiff
2019-01-26
hansonr
removing cyclic call
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
|
commitdiff
2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
tree
|
commitdiff
2019-01-25
hansonr
timing code
tree
|
commitdiff
2019-01-25
hansonr
JSON refactoring
tree
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commitdiff
2019-01-25
hansonr
JavaScript browser-based JSON parsing
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Added a '.fa' to filename examples
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Change of label
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Removed border around example filenames in...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 New layout and wording of Backups Preferences...
tree
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commitdiff
2019-01-24
gmungoc
JAL-3018 Ensembl version updated to 9.0
tree
|
commitdiff
2019-01-24
hansonr
adds File..Load Project file for JS
tree
|
commitdiff
2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
tree
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commitdiff
2019-01-23
hansonr
Menus close properly, toolips restored
tree
|
commitdiff
2019-01-23
Ben Soares
JAL-3141 Added Presets options in the Backups Preferenc...
tree
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commitdiff
2019-01-23
gmungoc
JAL-3063 correct handling of absent choice element...
tree
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commitdiff
2019-01-22
Ben Soares
JAL-3141 Fixed what happens when suffix template has...
tree
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commitdiff
2019-01-21
Ben Soares
JAL-3141 Rejigged the Preferences tab and changed some...
tree
|
commitdiff
2019-01-21
hansonr
added Platform settings separating mouse use of win...
tree
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commitdiff
2019-01-21
hansonr
added Platform settings separating mouse use of win...
tree
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commitdiff
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
tree
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commitdiff
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
tree
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commitdiff
2019-01-21
hansonr
minor Platform.isAMac() clean up
tree
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commitdiff
2019-01-21
hansonr
removing indirect references to Platform.isAMac()
tree
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commitdiff
2019-01-21
hansonr
comments only
tree
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commitdiff
2019-01-21
hansonr
menu update; popup not functioning, though?? Working...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 removing diagnostic output
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Fixed example filenames in Preferences pane...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Re-added some changes in Jalview2XML missed...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor
tree
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commitdiff
2019-01-18
gmungoc
JAL-3143 'id' not 'ID' attribute drives generation...
tree
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commitdiff
2019-01-18
hansonr
canvas line/font/pixel fixes; menu accelerators;
tree
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commitdiff
2019-01-17
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2019-01-16
Ben Soares
JAL-3141 Remove no longer used exampleLabel
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2019-01-15
hansonr
removal of AlignmentFrame lines
tree
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commitdiff
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