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Merge branch 'alpha/merge_212_JalviewJS_2112' into spike/JAL-3622_Scanner_swingjs_J21...
[jalview.git] / src /
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... tree | commitdiff
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... tree | commitdiff
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... tree | commitdiff
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... tree | commitdiff
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... tree | commitdiff
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Comment on ambiguous parameter parsing. tree | commitdiff
2019-12-05 MMWarownyJAL-3066 Change Slivka connection to https tree | commitdiff
2019-11-28 MMWarownyJAL-3066 Fix incorrect URL resolving with /slivka prefix. tree | commitdiff
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... tree | commitdiff
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better tree | commitdiff
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... tree | commitdiff
2019-11-19 gmungocJAL-3210 use JSUtil methods getFileBytes, getApplet tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... tree | commitdiff
2019-11-15 MMWarownyJAL-3066 Change server to compbio.dundee.ac.uk/slivka tree | commitdiff
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS tree | commitdiff
2019-11-05 gmungocJAL-3210 reverted (ignore previous commit) tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3130 can't read java.specification.version... tree | commitdiff
2019-11-05 gmungocJAL-3120 JAL-3130 can't read "java.specification.versio... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3263 redo 'Mandarin' character for JS... tree | commitdiff
2019-11-04 MMWarownyInclude missing job states. tree | commitdiff
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files tree | commitdiff
2019-10-31 gmungocJAL-3468 truncate feature description to 40 chars in... tree | commitdiff
2019-10-11 Ben SoaresJAL-3210 Just about working transpilation. Some work... tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 Create labels for fields and hack it to work... tree | commitdiff
2019-10-11 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... tree | commitdiff
2019-10-11 Mateusz WarownyJAL-3066 change service type naming to avoid menu entry... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 set calcId and autocalculated flags for annota... tasks/JAL-3070_wsinterfaces tree | commitdiff
2019-10-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 registerWorker start its thread automatically... tree | commitdiff
2019-10-10 Jim ProcterJAL-3070 use object identity equivalence for lists... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Read parameters directly from args list allowi... tree | commitdiff
2019-10-09 Mateusz WarownyJAL-3066 Fix log files retrieval. tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-10-07 Mateusz WarownyJal-3066 Retrieve job log and error log from the server. tree | commitdiff
2019-10-07 Jim ProcterRevert "JAL-3070 JAL-3066 fix initialisation of slivka... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 AACon: pass the instance name of the service... tree | commitdiff
2019-10-07 Mateusz WarownyJAL-3066 Check if annotation and features are present... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 report job ID when submitted tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 debug info: check response when adding feature... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 JAL-3070 AACon: pass the name of the service... tree | commitdiff
2019-10-07 Jim ProcterJAL-3066 hack to instantiate the correct client accordi... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 JAL-3066 provide standard concrete instances... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 JAL-3066 fix initialisation of slivka ServiceW... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 use identity equivalence for workers rather... tree | commitdiff
2019-10-07 Jim ProcterJAL-3070 formatting tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 reinstate the internal test service URL for... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 slivka service discovery as a background threa... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 alignment analysis service worker UI and setti... tree | commitdiff
2019-10-03 Jim ProcterJAL-3070 call checkDone() ASAP to avoid race condition... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 decouple WsMenuEntryProviderI code from JABAWS tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 reorganise prior to refactor tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 make AlignCalcUI service code work only with... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 discoverers return ServiceWithParameter, now... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 decontaminate the ‘preferred service’ methods... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 JAL-3062 tidy up slivka ws menu builder and... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 detect failed/broken annotation web service... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 pull up generic methods for an automatic align... tree | commitdiff
2019-10-02 Jim ProcterJAL-3070 TODO tree | commitdiff
2019-10-01 Mateusz WarownyJAL-3066 Sequence annotation services. tree | commitdiff
2019-09-27 Mateusz WarownyJAL-3066 Automatically discoverable Protein sequence... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 oops - refactor Slivka’s service stub too :) tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-3067 refactor annotation web... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 allow SequenceI.findPositions(0,column+1)... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 cope when dataset sequence is passed tree | commitdiff
2019-09-26 gmungocJAL-2481 remove code duplication left by merge tree | commitdiff
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 JAL-3066 formatting tree | commitdiff
2019-09-26 Jim ProcterJAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm... tree | commitdiff
2019-09-24 Jim ProcterJAL-3070 tidying tree | commitdiff
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service... tree | commitdiff
2019-09-23 Mateusz WarownyJAL-3066 Annotation Service Instance stub tree | commitdiff
2019-09-23 Mateusz WarownySlivkaWSDiscoverer formatting fix tree | commitdiff
2019-09-23 Mateusz WarownyJAL-3066 Move common web service methods to abstract... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 configure annotation service manager from... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 ensure RNAAliFold annotation rows display... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 formatting tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 detect presence of existing JABA RNAAliFold... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 match AbstractJabaCalcWorker’s annotation... tree | commitdiff
2019-09-23 Jim ProcterJAL-3070 javadoc for (mostly) jabaws specific methods tree | commitdiff
2019-09-20 Jim ProcterJAL-3070 rough-and-ready refactor of JABA SequenceAnnot... tree | commitdiff
2019-09-20 Jim ProcterJAL-3070 JAL-1379 deferred work on annotation based... tree | commitdiff
2019-09-19 Mateusz WarownyJAL-3066 Auto discover multiple sequence alignment... tree | commitdiff
2019-09-17 Jim ProcterJAL-3432 hide the slider when validator has no min... tree | commitdiff
2019-09-16 Mateusz WarownySet the initial value of the choice field to the defaul... tree | commitdiff
2019-09-16 Mateusz WarownyAdd the remaining msa services to the Discoverer tree | commitdiff
2019-09-11 Mateusz WarownyChange choice field to use dropbox instead of radio... tree | commitdiff
2019-09-11 Mateusz WarownyCreate generic msa service instance tree | commitdiff
2019-09-06 Mateusz WarownyMerge remote-tracking branch 'origin/alpha/JAL-3066_Jal... tree | commitdiff
2019-09-06 Mateusz WarownyJAL-3066 Working custom parameters for clustalo tree | commitdiff
2019-09-06 Jim ProcterJAL-3066 fix compile error (@matesuz - this will confli... tree | commitdiff
2019-09-06 Jim ProcterJAL_1426 JAL-3066 update Apache James mime parser and... tree | commitdiff
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system. tree | commitdiff
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