git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
JAL-4220 default threshold for including symbol in consensus is (of course) zero
[jalview.git]
/
test
/
jalview
/
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
|
commitdiff
2022-02-11
Ben Soares
JAL-3949 fixed failing commandlinetests due to more...
tree
|
commitdiff
2022-02-11
Ben Soares
Merge branch 'develop' into update/JAL-3949_abstracted_...
tree
|
commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
|
commitdiff
2022-02-07
Jim Procter
Merge branch 'feature/JAL-1713_overviewInProject' into...
tree
|
commitdiff
2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
tree
|
commitdiff
2022-02-04
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence_for211...
bug/JAL-3806_without_shared_DS_for_2_11_2
tree
|
commitdiff
2022-02-04
Jim Procter
JAL-3806 JAL-3725 update tests since CDS mappings now...
tree
|
commitdiff
2022-02-03
Jim Procter
JAL-2305 comments re testFindXrefSequences_withFetch...
tree
|
commitdiff
2022-01-28
Jim Procter
JAL-3137 tests are for linux only
tree
|
commitdiff
2022-01-28
Jim Procter
Merge branch 'merge/develop_JAL-3725' into develop
tree
|
commitdiff
2022-01-26
Jim Procter
JAL-3763 (for whatever reason) need to increase timeout...
tree
|
commitdiff
2022-01-26
Jim Procter
JAL-3763 (for whatever reason) need to increase timeout...
merge/develop_task/JAL-3763_newDatasetForCds
tree
|
commitdiff
2022-01-26
Jim Procter
Merge branch 'task/JAL-3763_newDatasetForCds' into...
tree
|
commitdiff
2022-01-26
Jim Procter
JAL-3806 JAL-3725 propagate relaxed criteria for stop...
tree
|
commitdiff
2022-01-26
gmungoc
JAL-3725 restrict mapped virtual feature location to...
tree
|
commitdiff
2022-01-26
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2022-01-26
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
|
commitdiff
2022-01-17
Jim Procter
JAL-3703 patch Windows save file test for 2.11.1 codebase
patch/r2_11_1_branch_JAL-3703_closing_files
tree
|
commitdiff
2022-01-17
Ben Soares
JAL-3703 Test that fails in Windows only, and only...
tree
|
commitdiff
2022-01-12
Ben Soares
JAL-3703 Test that fails in Windows only, and only...
tree
|
commitdiff
2021-11-08
Jim Procter
JAL-3855 verify pdb suffix is preserved when locally...
tree
|
commitdiff
2021-11-05
Jim Procter
JAL-3829 remove duplicate IDs in 3DBeacons generated...
tree
|
commitdiff
2021-11-05
Jim Procter
JAL-3919 use model format field to ensure we get the...
tree
|
commitdiff
2021-11-02
Jim Procter
JAL-3875 test case and patch to verify the query 3d...
tree
|
commitdiff
2021-10-18
Jim Procter
JAL-3904 failing test
tree
|
commitdiff
2021-10-01
gmungoc
JAL-3725 restrict mapped virtual feature location to...
tree
|
commitdiff
2021-10-01
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
|
commitdiff
2021-10-01
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
|
commitdiff
2021-09-24
Jim Procter
JAL-3821 data file for failing test
tree
|
commitdiff
2021-09-23
Jim Procter
JAL-3821 less ambiguous base class name for EMBL and...
tree
|
commitdiff
2021-09-23
Jim Procter
JAL-3821 failing test
tree
|
commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
|
commitdiff
2021-09-21
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
tree
|
commitdiff
2021-09-21
Jim Procter
JAL-3829 ignore the fake ID generated when a PDB format...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 updated response for P01308
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 tests need to wait for dialog to be closed...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 TDBeacons fetcher needs a sequence with at...
tree
|
commitdiff
2021-09-20
Jim Procter
JAL-3829 allow PDBEntry with file and ID with mismatchi...
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 unit test for FileFormats updated for GenBank/ENA
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 file formats and IdentifyFile updates for...
tree
|
commitdiff
2021-09-17
gmungoc
JAL-1260 refactored GenBank (and EMBL) flat file parser
tree
|
commitdiff
2021-09-17
Jim Procter
JAL-2226 new method to search for annotation matching...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3779 apply properties to all groups with given...
tree
|
commitdiff
2021-09-16
Jim Procter
JAL-3794 new test for recognition of protein or DNA...
tree
|
commitdiff
2021-09-16
Ben Soares
JAL-3761 listToArray became rangeListToArray
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom/To revised with tests; unused...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 debugged and working (but not tidied) locateIn...
tree
|
commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom2 work in progress commit
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3761 unit test for MapList.countPos()
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3761 failing test, formatting, method renamed
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3761 failing tests for locateInFrom/To with overlap...
tree
|
commitdiff
2021-09-15
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
|
commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 parallel not welcome here
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 test flakiness and human flakiness
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 more info on test fail - seems to be flaky
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 move mock query and responses to files
tree
|
commitdiff
2021-09-14
Jim Procter
JAL-3829 allow multiple URL mocks and include P01308...
tree
|
commitdiff
2021-09-13
Jim Procter
JAL-3829 ensure unmock the FTS PDB and TDB clients...
tree
|
commitdiff
2021-09-13
Jim Procter
JAL-3829 minimal test of additional TDB filters - not...
tree
|
commitdiff
2021-09-11
Jim Procter
JAL-3829 ensure tests use mocked service - proper excep...
tree
|
commitdiff
2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 insert title for structures from PDBe
tree
|
commitdiff
2021-09-10
Jim Procter
JAL-3829 update for v1.0 3d-beacons api spec
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 allow client-side selection of structures...
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 formatting
tree
|
commitdiff
2021-09-08
Jim Procter
JAL-3829 integration test verifying mock response is...
tree
|
commitdiff
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
tree
|
commitdiff
2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to Unipro...
tree
|
commitdiff
2021-09-06
Jim Procter
JAL-3829 pull out structure chooser query source tests...
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3829 JAL-3865 test structure chooser queries to...
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3829 use sequence dependent constructor for structu...
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3863 promote non-canonical version of dbref to...
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
tree
|
commitdiff
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
tree
|
commitdiff
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
|
commitdiff
2021-09-02
gmungoc
JAL-1842 unit test updated for EnsemblGene feature...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
tree
|
commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3829 updated tests for 3db fetcher’s working FTS...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3829 fixed up the 3d-beacons data columns definitio...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3829 tidying up PDBFTSRestClient test responses...
tree
|
commitdiff
2021-08-30
Jim Procter
JAL-3829 pushed the PDBFTSClient specific code to new...
tree
|
commitdiff
2021-08-30
arngucci
JAL-3829_spike minor changes
tree
|
commitdiff
2021-08-30
arngucci
JAL-3832 Gui working, with 3DBeacons parameters
tree
|
commitdiff
2021-08-18
Jim Procter
JAL-3855 JAL-2349 download PAE matrix along with alpha...
tree
|
commitdiff
2021-08-13
Jim Procter
JAL-2349 patch NPE exception during gradle test..
tree
|
commitdiff
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
tree
|
commitdiff
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
tree
|
commitdiff
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
tree
|
commitdiff
2021-04-06
arngucci
JAL-3829 more testing wit tdbeacons data columns and...
arnaud/develop
tree
|
commitdiff
2021-04-01
Arnaldo
JAL-3829 attempt to fix my changes to follow the Jira...
tree
|
commitdiff
2021-03-29
Arnaldo
fixed last commit
tree
|
commitdiff
2021-03-29
Arnaldo
Request now parses the whole structures, need to fix...
tree
|
commitdiff
2021-03-25
Arnaldo
TDB.executeRequest fix & test passed
tree
|
commitdiff
2021-03-25
Arnaldo
Added (and passed !)all the FTS tests from test.fts...
tree
|
commitdiff
next