JAL-2808 feature filters held on FeatureRenderer, getColor(feature)
[jalview.git] / test / jalview /
2017-11-02 gmungocJAL-2808 toString modified, tests corrected
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into
2017-10-31 gmungocJAL-2791 select columns by _visible_ features
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi...
2017-10-31 gmungocJAL-2792 test updated for 3 column table
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute...
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into...
2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop
2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour...
2017-10-11 gmungocJAL-2609 tests updated for revised label width
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
2017-10-11 kiramtJAL-2742 test updates following review
2017-10-11 kiramtJAL-2742 minor test updates following review
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage
2017-10-06 gmungocJAL-2738 unit test for mapping failure case
2017-10-05 gmungocJAL-2738 helper method for convolving mappings
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript...
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two...
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin...
2017-09-26 kiramtJAL-2742 uncomment test
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi...
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple...
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF...
2017-09-14 gmungocJAL-2727 add SelectionGroup, Tree and PCA to test
2017-09-13 gmungocJAL-2727 alignment width and height tailored to this...
2017-09-12 gmungocJAL-2727 first pass of test of memory recovery on close all
2017-09-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-2722'... portforward/JAL-2675_2102b1to2103
2017-09-05 Jim ProcterMerge branch 'bug/JAL-2722' into releases/Release_2_10_...
2017-09-05 kiramtJAL-2722 unit test bug/JAL-2722
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-04 Jim ProcterMerge branch 'bug/JAL-2704gapColourFading' into documen...
2017-09-04 gmungocJAL-2617 unit tests for CDS + stop codon, CDS with... bug/JAL-2617mappedStopCodon
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2691_nomultimermapping' into...
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation...
2017-09-01 gmungocJAL-2617 omit stop codon from synthesized CDS sequence
2017-09-01 kiramtJAL-2527 Additional test feature/JAL-2527
2017-09-01 kiramtJAL-2527 Unit test for group colouring
2017-08-31 kiramtJAL-2527 Unit test
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using...
2017-08-31 gmungocJAL-2704 unit test for Above PID gap colour, simplified... bug/JAL-2704gapColourFading
2017-08-30 gmungocJAL-2704 don't shade gap colour for PID/conservation
2017-08-30 gmungocJAL-2685 tweaks to output spacing, updated TestAlignSeq...
2017-08-30 gmungocJAL-2685 use actual selection for report of pairwise...
2017-08-27 Jim ProcterJAL-2691 assert chains are recovered by AAStructureBind... bug/JAL-2691_nomultimermapping
2017-08-23 gmungocJAL-2481 a smidgin more test coverage of findFeatures
2017-08-23 gmungocJAL-2682 non-regex sequence id parsing, and tests added
2017-08-23 gmungocJAL-2667 tests added, update status bar and tooltip
2017-08-22 Jim ProcterJAL-2681 cross-ref selection for targeted debugging
2017-08-22 Jim ProcterJAL-2681 source formatting
2017-08-22 gmungocJAL-2680 remove all mappings in test teardown
2017-08-22 gmungocJAL-2609 unit test for annotations displayed case
2017-08-22 gmungocJAL-2609 tweaks to, and tests for, calculateWrappedGeometry
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2609fastPaintW...
2017-08-21 gmungocJAL-2680 clear down all mappings before test
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature...
2017-08-10 gmungocMerge branch 'features/JAL-2446NCList' into features...
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