2017-06-15 |
gmungoc | JAL-2541 revised cut with features (work in progress) |
tree | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-13 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2593 avoid redundant rendering of co-located features |
tree | commitdiff |
2017-06-08 |
gmungoc | JAL-2526 correct boundary conditions for sequence left... |
tree | commitdiff |
2017-06-08 |
kiramt | JAL-2586 Clarification to URL link code bug/JAL-2586 |
tree | commitdiff |
2017-06-08 |
gmungoc | JAL-2526 cache first/last residue column positions... |
tree | commitdiff |
2017-06-07 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-05 |
kiramt | JAL-2586 Checkstyle flagged fix of unintended fall... |
tree | commitdiff |
2017-06-05 |
gmungoc | JAL-2480 remove redundant method, further test coverage |
tree | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2526sequenceCursor' into |
tree | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into |
tree | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor |
tree | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-05 |
kiramt | JAL-2571 Missed (alwaysRun=true) for @BeforeMethod |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 get bitset representing hidden columns |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 method taking a BitSet for hiding columns |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 fixed broken asserts for SequenceI.getInsertio... |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 SequenceI.getInsertionsAsBits for convenient... |
tree | commitdiff |
2017-06-02 |
Jim Procter | Merge branch 'bug/JAL-2577' into develop |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-02 |
gmungoc | JAL-2526 additional tests for findPosition with/without... |
tree | commitdiff |
2017-06-02 |
kiramt | JAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
tree | commitdiff |
2017-06-01 |
Jim Procter | Merge branch 'features/JAL-1648_cache_user_inputs'... |
tree | commitdiff |
2017-06-01 |
gmungoc | JAL-2563 JAL-2547 amended unit tests for amended setSta... |
tree | commitdiff |
2017-05-31 |
Jim Procter | Merge branch 'JAL-2571' into develop |
tree | commitdiff |
2017-05-31 |
tcofoegbu | JAL-2375 fix unit test to reflect improvement |
tree | commitdiff |
2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
2017-05-31 |
tcofoegbu | JAL-2533 updated unit test to reflect improvement |
tree | commitdiff |
2017-05-30 |
kiramt | JAL-2573 Fixes for alignment < viewport width, and... JAL-2571 |
tree | commitdiff |
2017-05-30 |
kiramt | JAL-2571 Corrected alignment width/height checks to... |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-30 |
gmungoc | JAL-2570 don't zap group colour scheme when mapping... |
tree | commitdiff |
2017-05-30 |
gmungoc | JAL-2526 first draft of findIndex/findPosition with... |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'bug/JAL-2034contextchange' into develop |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-29 |
Jim Procter | JAL-2465 fixed groups for JmolViewerTest.testStructureL... |
tree | commitdiff |
2017-05-29 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue position... |
tree | commitdiff |
2017-05-27 |
Jim Procter | Merge branch 'bug/JAL-2491' into develop |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 test to verify SetStatus returns -1 so mouseOv... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2547 JAL-2562 rejig SetStatusMessage return value... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2526 test and documentation for SeqPanel.setStatus... |
tree | commitdiff |
2017-05-26 |
gmungoc | JAL-2480 move ContiguousI and Range to jalview.datamodel |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift... |
tree | commitdiff |
2017-05-24 |
kiramt | JAL-2034 Added isDefined flag to SequenceGroup |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 skip ‘Unrecognised Service’ which resolves... |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 replace JABAWS 2.1 with 2.2 client and remove... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refact... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 unit tests for getFeaturesForGroup |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2490 add non-positional feature case to test prior... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2480 always include all non-positional features... |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 initial unit tests for edit cut relocate features |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);... |
tree | commitdiff |
2017-05-18 |
kiramt | JAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set helix number as feature group in SequenceF... |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 additional tests/asserts prior to refactoring |
tree | commitdiff |
2017-05-16 |
kiramt | Merge branch 'develop' into bug/JAL-2491 |
tree | commitdiff |
2017-05-16 |
kiramt | JAL-2491 Better merge |
tree | commitdiff |
2017-05-16 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2311 disable and relocate Jared service tests to... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 - required callers to specify exact ignore... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-05-15 |
kiramt | JAL-2491 Tests |
tree | commitdiff |
2017-05-12 |
kiramt | JAL-2491 Tidies to Overview panel calls in light of... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 more efficient contains check on add; tidied... |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-12 |
kiramt | JAL-2491 Unit test updates |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2507 JAL-2509 allow whitespace==null for annotation... |
tree | commitdiff |
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