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JAL-3783 Reverting to using groovy-all-2.4.12-indy.jar to fix serious problem with...
[jalview.git] / test /
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants... tree | commitdiff
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-26 gmungocJAL-1793 only decode specific special characters in... tree | commitdiff
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation tree | commitdiff
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields tree | commitdiff
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests tree | commitdiff
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... tree | commitdiff
2019-06-26 Jim ProcterJAL-3332 test to check for duplicate db sources and... tree | commitdiff
2019-06-26 Jim ProcterJAL-3330 JAL-3332 relocate and simplify BeforeClass... tree | commitdiff
2019-06-26 Jim ProcterJAL-3330 test to verify sub/attributeName array is... tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'bug/JAL-2830_editManglesDatasetSequence... tree | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... tree | commitdiff
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature... tree | commitdiff
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared... tree | commitdiff
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now... tree | commitdiff
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and... tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-06-10 gmungocJAL-3296 ensure sequence cursor reset when sequence... bug/JAL-3296changeStartInvalidateCursor tree | commitdiff
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... tree | commitdiff
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-05-27 gmungocJAL-3141 test file in test folder not examples tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixed tests tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... tree | commitdiff
2019-05-21 gmungocJAL-3273 small correction to expected result calculation tree | commitdiff
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows tree | commitdiff
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... tree | commitdiff
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... tree | commitdiff
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... tree | commitdiff
2019-04-17 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME... tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test... tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... tree | commitdiff
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... tree | commitdiff
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... tree | commitdiff
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests tree | commitdiff
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... tree | commitdiff
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on 3 more main methods tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... tree | commitdiff
2019-04-04 gmungocJAL-3220 unneeded main methods removed tree | commitdiff
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups tree | commitdiff
2019-03-29 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-28 gmungocJAL-1889 patch for failing isControDown test on build... tree | commitdiff
2019-03-28 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop tree | commitdiff
2019-03-25 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned... tree | commitdiff
2019-03-23 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout() tree | commitdiff
2019-03-21 gmungocJAL-1889 better debug logging tree | commitdiff
2019-03-21 gmungocJAL-1889 added belt and braces deleteOnExit() to test... tree | commitdiff
2019-03-21 gmungocJAL-1889 correct props param, remove dasserver, output... tree | commitdiff
2019-03-21 gmungocJAL-1889 more diagnostics for CommandLineOperations tree | commitdiff
2019-03-21 gmungocJAL-1889 diagnostics for failing test on server tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-20 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... tree | commitdiff
2019-03-15 gmungocJAL-2814 updated unit test for code change tree | commitdiff
2019-03-13 gmungocJAL-1889 hack to ensure endRes is computed in setUp tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown tree | commitdiff
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 tree | commitdiff
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... tree | commitdiff
2019-03-11 gmungocJAL-3127 fix faulty merge tree | commitdiff
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into... tree | commitdiff
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored tree | commitdiff
2019-03-07 gmungocJAL-2717 JAL-2360 belated unit tests for ColourMenuHelper tree | commitdiff
2019-03-07 gmungocMerge branch 'feature/JAL-3205symmetricCalc' into develop tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi... tree | commitdiff
2019-03-05 gmungocJAL-3049 redo (part of) commit 92bc328 tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colour... tree | commitdiff
2019-03-05 gmungocJAL-3205 added a delta parameter to Matrix.equals() feature/JAL-3205symmetricCalc tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select... tree | commitdiff
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2019-03-04 gmungocJAL-3205 worked examples in unit test for symmetric... tree | commitdiff
2019-03-03 gmungocJAL-3205 one more unit test case tree | commitdiff
2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... tree | commitdiff
2019-03-01 gmungocJAL-3093 unit test adapts to actual number of annotatio... feature/JAL-3093wrappedModeTooltips tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into... tree | commitdiff
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