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JAL-3253-applet JAL-3397 delete fix
[jalview.git] / test /
2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes... tree | commitdiff
2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant... tree | commitdiff
2018-06-06 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-06-06 Jim ProcterJAL-2920 don’t output variant/original sequence as... tree | commitdiff
2018-06-06 Jim ProcterJAL-1920 JAL-3017 use newline not <br/> in description... tree | commitdiff
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed... tree | commitdiff
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList tree | commitdiff
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-23 gmungocJAL-2997 unit test tree | commitdiff
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature tree | commitdiff
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates tree | commitdiff
2018-05-11 gmungocJAL-2986 failing test added tree | commitdiff
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile tree | commitdiff
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre... tree | commitdiff
2018-05-01 gmungocJAL-1767 include d and e vectors in Matrix.copy() tree | commitdiff
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back... tree | commitdiff
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... tree | commitdiff
2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel tree | commitdiff
2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA tree | commitdiff
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... tree | commitdiff
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn... tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... tree | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments tree | commitdiff
2018-04-06 Jim Procterfailing test for JAL-2223 tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 formatting tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
2018-03-21 Jim ProcterJAL-2754 reinstate PA import from bad conflict merge tree | commitdiff
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-21 Jim ProcterJAL-2754 don’t use deprecated api for getting font... tree | commitdiff
2018-03-19 gmungocJAL-2620 parse genetic code tables from standard file... tree | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables tree | commitdiff
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES tree | commitdiff
2018-03-14 gmungocJAL-2933 pass viewport in Finder constructor, find... bug/JAL-2839findWithHidden tree | commitdiff
2018-03-14 gmungocJAL-2933 gui and applet Finder hold a FinderI per viewport tree | commitdiff
2018-03-13 gmungocJAL-2839 additional test case tree | commitdiff
2018-03-13 gmungocJAL-2839 refactored analysis.Finder and tests tree | commitdiff
2018-03-13 gmungocJAL-2839 addResult ignores duplicates tree | commitdiff
2018-03-09 gmungocJAL-2839 Finder refactoring prior to fixing the defect tree | commitdiff
2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2... merges/JAL-2906_update2_11_from_2_10_4 tree | commitdiff
2018-03-08 gmungocJAL-2885 tests updated for code changes tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea... tree | commitdiff
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_... tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 scan all test IDs before testing and reporting... bugs/JAL-2780_JAL-2781_pdbnegativenums tree | commitdiff
2018-02-13 Jim ProcterJAL-2780 SequenceI.findFeatures takes column numbers... tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 ensure Trim is disabled before test starts tree | commitdiff
2018-02-13 Jim ProcterJAL-2781 report exactly which residues do not receive... tree | commitdiff
2018-02-12 Jim ProcterJAL-2780 JAL-2781 extra column in mapping array tree | commitdiff
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... tree | commitdiff
2018-02-12 Jim ProcterJAL-2780 use value of ’UNASSIGNED’ constant in assert... tree | commitdiff
2018-02-12 Jim ProcterJAL-2904 replaced assert for (getEnd()-getStart()+1... tree | commitdiff
2018-02-11 Jim ProcterJAL-2781 fix test data for full length annotation tree | commitdiff
2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS... bug/JAL-2666 tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 run sequentially and ensure windows... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 first pass at failing test for incorr... tree | commitdiff
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactored helper method... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 (failing) test comparing location... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... tree | commitdiff
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator tree | commitdiff
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review tree | commitdiff
2018-02-05 gmungocJAL-2897 more informative description on synonymous... tree | commitdiff
2018-02-05 gmungocJAL-2897 more informative description on synonymous... tree | commitdiff
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge tree | commitdiff
2018-02-05 gmungocJAL-2897 more informative description on synonymous... tree | commitdiff
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... tree | commitdiff
2018-01-31 kiramtJAL-2759 test renaming tree | commitdiff
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences tree | commitdiff
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check tree | commitdiff
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed tree | commitdiff
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... tree | commitdiff
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... tree | commitdiff
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... tree | commitdiff
2018-01-30 kiramtJAL-2759 Keep numColumns up to date tree | commitdiff
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi... tree | commitdiff
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... tree | commitdiff
2018-01-29 gmungocJAL-1270 testPadGaps() added tree | commitdiff
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... tree | commitdiff
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... tree | commitdiff
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
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