reconciled with develop
[jalview.git] / test /
2017-10-13 kiramtJAL-2774 Created single event for update to both start...
2017-10-11 gmungocJAL-2609 tests updated for revised label width
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocJAL-2225 updates for review comments, Checkstyle
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
2017-10-11 kiramtJAL-2742 test updates following review
2017-10-11 kiramtJAL-2742 minor test updates following review
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot
2017-10-06 kiramtJAL-2674 Last moves to iterators
2017-10-06 gmungocJAL-2738 unit test for mapping failure case
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-05 gmungocJAL-2738 helper method for convolving mappings
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript...
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two...
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence
2017-10-03 kiramtJAL-2647 unit test
2017-10-03 kiramtJAL-2674 testing
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 kjvdheideClarified test a little
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-10-03 kjvdheideAdded checks for X mouse coordinate being >= 0 and...
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-02 kjvdhAdded check for negative start columns
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 kiramtJAL-2674 Tidies
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator
2017-09-28 kiramtJAL-2647 more iterators
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin...
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-26 kiramtJAL-2742 uncomment test
2017-09-26 kiramtJAL-2674 uncomment test
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'...
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor.
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi...
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'...
2017-09-26 kiramtJAL-2740 additional unit testing bug/JAL-2740
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'...
2017-09-26 kiramtJAL-2740 removed unwanted code, added unit test
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench...
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2739'...
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions
2017-09-21 kiramtJAL-2674 unit test for gapBitSet
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-09-21 kiramtJAL-2674 Reset tests
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence
2017-09-20 kiramtJAL-2674 Transferred updated unit tests from first...
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple...
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF...
2017-09-14 gmungocJAL-2541 unit test added
2017-09-14 gmungocJAL-2541 test with seq start > 1 (and fix Undo bug...
2017-09-14 gmungocJAL-2541 it works!! it works!!!
2017-09-14 gmungocJAL-2541 clean unit test of cut/undo (ungapped sequence)
2017-09-14 gmungocJAL-2541 more useful assert message
2017-09-14 gmungocJAL-2541 adjust end of contact feature spanning cut...
2017-09-14 gmungocJAL-2541 length check in deleteChars (redoing lost...
2017-09-14 gmungocJAL-2541 working Cut/Undo with feature relocation
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress)
2017-09-14 gmungocJAL-2727 add SelectionGroup, Tree and PCA to test
2017-09-13 gmungocJAL-2727 alignment width and height tailored to this...
2017-09-12 gmungocJAL-2727 first pass of test of memory recovery on close all
2017-09-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-2722'... portforward/JAL-2675_2102b1to2103
2017-09-05 Jim ProcterMerge branch 'bug/JAL-2722' into releases/Release_2_10_...
2017-09-05 kiramtJAL-2722 unit test bug/JAL-2722
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-05 gmungocJAL-2225 unused collateForPdb removed
2017-09-05 gmungocJAL-2225 fix bug in collating unique pdb files and...
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-04 Jim ProcterMerge branch 'bug/JAL-2704gapColourFading' into documen...
2017-09-04 gmungocJAL-2617 unit tests for CDS + stop codon, CDS with... bug/JAL-2617mappedStopCodon
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2691_nomultimermapping' into...
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation...
2017-09-01 gmungocJAL-2617 omit stop codon from synthesized CDS sequence
2017-09-01 kiramtJAL-2527 Additional test feature/JAL-2527
2017-09-01 kiramtJAL-2527 Unit test for group colouring
2017-08-31 kiramtJAL-2527 Unit test
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using...
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