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JAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalvi...
[jalview.git]
/
test
/
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-24
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-21
gmungoc
JAL-3032 MCview package renamed mc_view in test classes
tree
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commitdiff
2018-08-17
gmungoc
JAL-3038 unit test updates for JalviewJS workaround...
tree
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commitdiff
2018-08-16
gmungoc
Merge branch 'bug/JAL-3082selectRegex' into Jalview...
tree
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commitdiff
2018-08-16
gmungoc
JAL-3082 one more test condition
bug/JAL-3082selectRegex
tree
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commitdiff
2018-08-16
gmungoc
JAL-3082 handle regex error, exclusive threshold, unit...
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 refactor for more efficient scan of 'gene...
tree
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commitdiff
2018-08-10
gmungoc
JAL-3076 fetch Ensembl sequence as JSON instead of...
tree
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commitdiff
2018-08-03
Ben Soares
JAL-3061
tree
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commitdiff
2018-08-02
Ben Soares
JAL-3053
tree
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commitdiff
2018-07-31
bsoares
Stockholm file for test
tree
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commitdiff
2018-07-23
gmungoc
JAL-3032 test updates to match change to implementation
tree
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commitdiff
2018-07-23
gmungoc
JAL-3049 corrected code and unit tests
tree
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commitdiff
2018-07-20
gmungoc
JAL-3048 test updated for AlignExportSettings changes
tree
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commitdiff
2018-07-18
Jim Procter
JAL-3026 updated featurecolourtooltip method signature...
tree
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commitdiff
2018-07-18
Jim Procter
JAL-3048 JAL-1353 bug demo update for refactored edit...
tree
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commitdiff
2018-07-18
Jim Procter
JAL-3048 update tests for alignment export bean refactoring
tree
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commitdiff
2018-07-18
Jim Procter
JAL-3048 test for successful save with refactored saveA...
tree
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commitdiff
2018-07-17
bsoares
JAL-3065
tree
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commitdiff
2018-07-06
gmungoc
Merge branch 'bug/JAL-3049colourCellTooltip' into Jalvi...
tree
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commitdiff
2018-07-02
Jim Procter
JAL-3048 allow a chain of responses for a particular...
tree
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commitdiff
2018-06-29
Jim Procter
JAL-3048 jalview.utils.dialogrunner.DialogRunner allows...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 format/comment tidy
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
gmungoc
JAL-2920 unit tests for 3 or more original or variant...
tree
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commitdiff
2018-06-06
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
gmungoc
JAL-2808 update test for revised treatment of 'mixed...
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
tree
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commitdiff
2018-05-23
gmungoc
JAL-2997 unit test
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-05-11
gmungoc
JAL-2986 additional asserts for SequenceCursor updates
tree
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commitdiff
2018-05-11
gmungoc
JAL-2986 failing test added
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 basic test for Description from features with...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 patch test to ensure structures are actually...
patch/JAL-2321_addsecstrForDroppedPDBFile
tree
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commitdiff
2018-05-07
gmungoc
JAL-2808 ensure test setUp/tearDown alwaysRun
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-05-01
gmungoc
JAL-1767 include d and e vectors in Matrix.copy()
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
tree
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commitdiff
2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
tree
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commitdiff
2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnn...
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
tree
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commitdiff
2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-06
Jim Procter
failing test for JAL-2223
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 failing test for structure mapping
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 formatting
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
JAL-2754 reinstate PA import from bad conflict merge
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
Jim Procter
JAL-2754 don’t use deprecated api for getting font...
tree
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commitdiff
2018-03-19
gmungoc
JAL-2620 parse genetic code tables from standard file...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2620 alternative genetic code translation tables
tree
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
tree
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commitdiff
2018-03-13
gmungoc
JAL-2839 additional test case
tree
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commitdiff
2018-03-13
gmungoc
JAL-2839 refactored analysis.Finder and tests
tree
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commitdiff
2018-03-13
gmungoc
JAL-2839 addResult ignores duplicates
tree
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commitdiff
2018-03-09
gmungoc
JAL-2839 Finder refactoring prior to fixing the defect
tree
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commitdiff
2018-03-08
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
merges/JAL-2906_update2_11_from_2_10_4
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_...
tree
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-20
gmungoc
JAL-2897 updated unit test for code change
features/JAL-1793VCF
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 scan all test IDs before testing and reporting...
bugs/JAL-2780_JAL-2781_pdbnegativenums
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 SequenceI.findFeatures takes column numbers...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 ensure Trim is disabled before test starts
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 report exactly which residues do not receive...
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2780 JAL-2781 extra column in mapping array
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest...
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2780 use value of ’UNASSIGNED’ constant in assert...
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2904 replaced assert for (getEnd()-getStart()+1...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2781 fix test data for full length annotation
tree
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commitdiff
2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
bug/JAL-2666
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 run sequentially and ensure windows...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2891 clear all windows always beforeTest...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 first pass at failing test for incorr...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 JAL-2902 refactored helper method...
tree
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commitdiff
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