2017-06-27 |
gmungoc | JAL-2541 more useful assert message |
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2017-06-27 |
gmungoc | Merge branch 'features/JAL-2446NCList' into bug/JAL... |
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2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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2017-06-24 |
gmungoc | JAL-2589 unit test updated |
tree | commitdiff |
2017-06-24 |
gmungoc | JAL-2547 fix case of gap followed by enclosing contact... |
tree | commitdiff |
2017-06-22 |
gmungoc | JAL-2481 JAL-2593 JAL-2526 further optimisation of... |
tree | commitdiff |
2017-06-22 |
gmungoc | JAL-2480 simpler and safer test to avoid adding duplicates |
tree | commitdiff |
2017-06-21 |
gmungoc | JAL-2480 tidy generic initialisations, SequenceFeatures... |
tree | commitdiff |
2017-06-21 |
gmungoc | JAL-2541 adjust end of contact feature spanning cut... |
tree | commitdiff |
2017-06-21 |
gmungoc | JAL-2480 clarify that findOverlaps excludes spanning... |
tree | commitdiff |
2017-06-20 |
gmungoc | JAL-2541 length check in deleteChars to avoid index... |
tree | commitdiff |
2017-06-20 |
gmungoc | JAL-2541 working Cut/Undo with feature relocation |
tree | commitdiff |
2017-06-15 |
gmungoc | JAL-2563 test updated for fix |
tree | commitdiff |
2017-06-15 |
gmungoc | Merge branch 'bug/JAL-2386groupConservationColouring... |
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2017-06-15 |
gmungoc | JAL-2541 revised cut with features (work in progress) |
tree | commitdiff |
2017-06-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... bug/JAL-2591 |
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2017-06-15 |
gmungoc | Merge branch 'bug/JAL-2589gapColour' into develop |
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2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-13 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2593 avoid redundant rendering of co-located features |
tree | commitdiff |
2017-06-08 |
gmungoc | JAL-2526 correct boundary conditions for sequence left... |
tree | commitdiff |
2017-06-08 |
gmungoc | JAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring |
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2017-06-08 |
kiramt | JAL-2586 Clarification to URL link code bug/JAL-2586 |
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2017-06-08 |
kiramt | JAL-2591 Refactor HiddenColumns to use ArrayList instea... |
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2017-06-08 |
kiramt | JAL-2591 More HiddenColumns refactoring. Tests passing. |
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2017-06-08 |
gmungoc | JAL-2526 cache first/last residue column positions... |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 Further refactoring (still incomplete) |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 More refactoring (incomplete) |
tree | commitdiff |
2017-06-07 |
kiramt | JAL-2591 Hidden columns regions can be output to string... |
tree | commitdiff |
2017-06-07 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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2017-06-07 |
kiramt | JAL-2591 updated HiddenColumns::findHiddenRegionPositio... |
tree | commitdiff |
2017-06-07 |
gmungoc | JAL-2386 ensure group conservation shading is applied... |
tree | commitdiff |
2017-06-06 |
gmungoc | JAL-2589 correct colour for Gap in Score and User Defin... |
tree | commitdiff |
2017-06-05 |
kiramt | JAL-2586 Checkstyle flagged fix of unintended fall... |
tree | commitdiff |
2017-06-05 |
gmungoc | JAL-2480 remove redundant method, further test coverage |
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2017-06-05 |
gmungoc | Merge branch 'features/JAL-2526sequenceCursor' into |
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2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into |
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2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor |
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2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-05 |
kiramt | JAL-2571 Missed (alwaysRun=true) for @BeforeMethod |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 get bitset representing hidden columns |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 method taking a BitSet for hiding columns |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 fixed broken asserts for SequenceI.getInsertio... |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2291 SequenceI.getInsertionsAsBits for convenient... |
tree | commitdiff |
2017-06-02 |
Jim Procter | Merge branch 'bug/JAL-2577' into develop |
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2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-02 |
gmungoc | JAL-2526 additional tests for findPosition with/without... |
tree | commitdiff |
2017-06-02 |
kiramt | JAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
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2017-06-01 |
Jim Procter | Merge branch 'features/JAL-1648_cache_user_inputs'... |
tree | commitdiff |
2017-06-01 |
gmungoc | JAL-2563 JAL-2547 amended unit tests for amended setSta... |
tree | commitdiff |
2017-05-31 |
Jim Procter | Merge branch 'JAL-2571' into develop |
tree | commitdiff |
2017-05-31 |
tcofoegbu | JAL-2375 fix unit test to reflect improvement |
tree | commitdiff |
2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
2017-05-31 |
tcofoegbu | JAL-2533 updated unit test to reflect improvement |
tree | commitdiff |
2017-05-30 |
kiramt | JAL-2573 Fixes for alignment < viewport width, and... JAL-2571 |
tree | commitdiff |
2017-05-30 |
kiramt | JAL-2571 Corrected alignment width/height checks to... |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features... |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-30 |
gmungoc | JAL-2570 don't zap group colour scheme when mapping... |
tree | commitdiff |
2017-05-30 |
gmungoc | JAL-2526 first draft of findIndex/findPosition with... |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'bug/JAL-2034contextchange' into develop |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-29 |
Jim Procter | JAL-2465 fixed groups for JmolViewerTest.testStructureL... |
tree | commitdiff |
2017-05-29 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue position... |
tree | commitdiff |
2017-05-27 |
Jim Procter | Merge branch 'bug/JAL-2491' into develop |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2563 test to verify SetStatus returns -1 so mouseOv... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2547 JAL-2562 rejig SetStatusMessage return value... |
tree | commitdiff |
2017-05-27 |
Jim Procter | JAL-2526 test and documentation for SeqPanel.setStatus... |
tree | commitdiff |
2017-05-26 |
gmungoc | JAL-2480 move ContiguousI and Range to jalview.datamodel |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift... |
tree | commitdiff |
2017-05-24 |
kiramt | JAL-2034 Added isDefined flag to SequenceGroup |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 skip ‘Unrecognised Service’ which resolves... |
tree | commitdiff |
2017-05-23 |
Jim Procter | JAL-2549 replace JABAWS 2.1 with 2.2 client and remove... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refact... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 unit tests for getFeaturesForGroup |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
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