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Merge branch 'features/JAL-2388OverviewWindow' into develop
[jalview.git]
/
test
/
2017-03-21
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-03-20
Jim Procter
Merge branch 'bug/JAL-2421overviewboxflicker' into...
tree
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commitdiff
2017-03-17
kiramt
JAL-2388 ViewportRanges unit test
tree
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commitdiff
2017-03-17
kiramt
JAL-2437 Synchronization corrections and unit tests
tree
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commitdiff
2017-03-17
kiramt
JAL-2388 Renamed column and row subtraction functions
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Unit test update
tree
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commitdiff
2017-03-15
kiramt
JAL-2388 Unit tests and tidies
tree
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commitdiff
2017-03-14
kiramt
JAL-2388 New hidden cols/seqs functions to support...
tree
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commitdiff
2017-03-10
kiramt
JAL-2437 Fixed reordering of sequences when hiding...
tree
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commitdiff
2017-03-10
kiramt
JAL-2388 Moving some alignment panel logic into overvie...
tree
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commitdiff
2017-03-09
kiramt
JAL-2388 Minor fix for annotation graph, removed unit...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-07
kiramt
JAL-2388 Fixed inherited&new out-by-one errors; further...
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-07
kiramt
JAL-2388 Additional unit tests
tree
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commitdiff
2017-03-07
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 findColumnPosition returns 0 for cols in regio...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 Additional fix to ColumnSelection when hidden...
tree
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commitdiff
2017-03-06
kiramt
JAL-2388 Remove OverviewDimensions dependency on gui...
tree
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commitdiff
2017-03-06
kiramt
JAL-2388 Corrected overview panel behaviour, updated...
tree
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commitdiff
2017-03-03
kiramt
JAL-2429 Fix to ColumnSelection::findColumnPosition
tree
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commitdiff
2017-03-03
kiramt
JAL-2388 Initial removal of hidden cols/seqs out of...
tree
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commitdiff
2017-03-01
gmungoc
JAL-1264 smarter way to skip autocalc'd annotations...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-02-28
kiramt
JAL-2388 Removing sources of non-determinism in unit...
tree
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commitdiff
2017-02-27
kiramt
JAL-2388 Minor refactoring
tree
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commitdiff
2017-02-27
kiramt
JAL-2388 Unit tests take 2
tree
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commitdiff
2017-02-23
kiramt
JAL-2388 Unit tests for columns, take 1
tree
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commitdiff
2017-02-23
kiramt
JAL-2388 Unit tests in progress
tree
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commitdiff
2017-02-21
kiramt
Merge branch 'bug/JAL-2421overviewboxflicker' into
tree
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commitdiff
2017-02-21
kiramt
Merge branch 'develop' into features/JAL-2388OverviewWindow
tree
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commitdiff
2017-02-21
kiramt
JAL-2421 Unit test
tree
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commitdiff
2017-02-20
Jim Procter
Merge branch 'features/JAL-2379pcaMemory' into develop
tree
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commitdiff
2017-02-17
kiramt
JAL-2388 Incomplete unit tests
tree
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commitdiff
2017-02-17
kiramt
JAL-2421 incomplete unit test
tree
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commitdiff
2017-02-17
kiramt
JAL-2421 Fix to alignment panel scroll values, and...
tree
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commitdiff
2017-02-15
Jim Procter
JAL-2374 tests for SequenceGroup.contains
tree
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commitdiff
2017-02-15
Jim Procter
JAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
tree
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commitdiff
2017-02-09
Jim Procter
Merge branch 'develop' into features/JAL-2316
features/JAL-2316
tree
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commitdiff
2017-02-09
gmungoc
JAL-2371 no test for lower case consensus as not expect...
tree
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commitdiff
2017-02-09
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
features/JAL-2379pcaMemory
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 check for circular reference in SequenceGroup...
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 set initial selection group alignment context
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-07
gmungoc
JAL-2397 PCA gap cost uses last column of score matrix
tree
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commitdiff
2017-02-06
gmungoc
JAL-2379 computePairwiseScores() moved to ScoreMatrix
tree
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commitdiff
2017-02-03
gmungoc
JAL-2379 'direct' pairwise score calculation for PCA...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2099 belated unit test
tree
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commitdiff
2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-26
kiramt
JAL-2316 Updated to use identifiers jalview service
tree
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commitdiff
2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
tree
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commitdiff
2017-01-26
gmungoc
JAL-2344 test fix and code tidy for review comments
tree
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commitdiff
2017-01-26
gmungoc
JAL-2380 code tidy after review
tree
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commitdiff
2017-01-23
gmungoc
JAL-2379 made SparseMatrix.divide() so as to exactly...
tree
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commitdiff
2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-19
gmungoc
JAL-2370 unit tests for extracted ColumnSelection.stret...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2379 more realistic matrices for unit tests
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2370 fix bug when hiding a range including two...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseMatrix alternative to Matrix, both MatrixI
tree
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseDoubleArray added (for use by SparseMatrix)
tree
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commitdiff
2017-01-16
gmungoc
JAL-1270 class renamed
tree
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commitdiff
2017-01-16
gmungoc
JAL-2380 fix Matrix.postMultiply()
tree
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commitdiff
2017-01-16
gmungoc
JAL-1270 tweaks to AlignmentGenerator / client class
tree
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commitdiff
2017-01-12
gmungoc
JAL-1270 renamed AlignmentGenerator, and added peptide...
tree
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commitdiff
2017-01-12
gmungoc
JAL-2344 now flagging formats as 'identifiable' instead...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
tree
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commitdiff
2017-01-10
gmungoc
JAL-2377 avoid infinite loop formatting 1.0E-310
tree
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commitdiff
2017-01-10
kiramt
JAL-2316 Separate label/db name in UrlProviders. Unit...
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2017-01-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
JAL-2360 findColour() with no args removed from ColourS...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2374 unit test for (modified) Alignment.findGroup()
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 add test for toggling ignore gaps with PID...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 tests added
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-29
gmungoc
JAL-2630 first pass groovy colour scheme (with slight...
tree
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commitdiff
2016-12-23
gmungoc
JAL-2360 removed UserDefinedColours.userColourSchemes
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 simplified code to create a new colour scheme
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 ColourMenuHelper now builds and selects items...
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
tree
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commitdiff
2016-12-20
gmungoc
JAL-2360 testRegisterColourScheme to demonstrate a...
tree
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commitdiff
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