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JAL-3990 fix typo in showStructures command for Chimera
[jalview.git]
/
test
/
2019-08-09
gmungoc
JAL-3390 refactoring tidy of colourBySequence call...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3390 move StructureCommands to utils package
tree
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commitdiff
2019-08-08
gmungoc
JAL-3390 improved Jmol colour by sequence command ...
tree
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commitdiff
2019-08-08
gmungoc
JAL-3390 StructureCommands atomspec helper, corrected...
tree
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commitdiff
2019-08-08
gmungoc
JAL-3400 include sequence name in View | Show Chain...
tree
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commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3390hideUnmappe...
tree
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commitdiff
2019-08-06
gmungoc
JAL-3390 first pass refactoring for JalviewJmolBinding...
tree
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commitdiff
2019-08-06
gmungoc
JAL-3390 pull up of getShownResidues() to AAStructureBi...
tree
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commitdiff
2019-08-05
gmungoc
JAL-3390 new View menu option to hide hidden regions...
tree
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
tree
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
tree
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
tree
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
tree
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
tree
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 JAL-3332 relocate and simplify BeforeClass...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 test to verify sub/attributeName array is...
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-2830_editManglesDatasetSequence...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
tree
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commitdiff
2019-06-17
gmungoc
JAL-2792 JAL-3187 linked features (if shown) in Feature...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
tree
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commitdiff
2019-06-17
gmungoc
JAL-3187 add sequence to feature details table (and...
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixed tests
tree
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
tree
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commitdiff
2019-05-21
gmungoc
JAL-3273 small correction to expected result calculation
tree
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commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
tree
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commitdiff
2019-04-23
Jim Procter
Merge branch 'develop' into bug/JAL-3224_getdown_change...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 tidy up system.output
jims/JAL-3130_Java11_Gradle_publishing
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 call Jalview via the Test JVM’s JAVA_HOME...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 JAL-1889 reportCurrentWorkingDirectory test...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
tree
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commitdiff
2019-04-16
Jim Procter
Reinstate imports from "JAL-1889 JAL-3130 patch broken...
tree
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commitdiff
2019-04-16
Jim Procter
JAL-1189 JAL-3130 patch broken tests
tree
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commitdiff
2019-04-12
Jim Procter
JAL-3130 specify module list when launching new Jalview...
tree
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
tree
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commitdiff
2019-04-02
gmungoc
JAL-3218 allow both Hide and Reveal in scale panel...
bug/JAL-3218scalePanelPopups
tree
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commitdiff
2019-03-28
gmungoc
JAL-1889 patch for failing isControDown test on build...
tree
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commitdiff
2019-03-28
gmungoc
Merge branch 'feature/JAL-3181linkOrdering' into develop
tree
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commitdiff
2019-03-25
gmungoc
JAL-2717 adjusted code so default correctly returned...
tree
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commitdiff
2019-03-23
gmungoc
JAL-1889 remove debug logging, add updateLayout()
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 better debug logging
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 added belt and braces deleteOnExit() to test...
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 correct props param, remove dasserver, output...
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 more diagnostics for CommandLineOperations
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 diagnostics for failing test on server
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-20
gmungoc
JAL-3212 unit test and fix for Scale Panel bug
tree
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
tree
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commitdiff
2019-03-12
gmungoc
JAL-1270 missing 'alwaysRun=true' added to setup/teardown
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'develop' into merge/JAL-3127
tree
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commitdiff
2019-03-11
gmungoc
JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
tree
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commitdiff
2019-03-11
gmungoc
JAL-3127 fix faulty merge
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'develop' into merge/JAL-3127
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-2250colourAllGroups' into...
tree
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commitdiff
2019-03-11
gmungoc
JAL-3201 restore group colours correctly from project
feature/JAL-2250colourAllGroups
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-11
gmungoc
JAL-3206 strict above/below threshold test restored
tree
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commitdiff
2019-03-07
gmungoc
JAL-2717 JAL-2360 belated unit tests for ColourMenuHelper
tree
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commitdiff
2019-03-07
gmungoc
Merge branch 'feature/JAL-3205symmetricCalc' into develop
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3049 redo (part of) commit 92bc328
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3049colour...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
feature/JAL-3205symmetricCalc
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3082select...
tree
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commitdiff
2019-03-04
gmungoc
JAL-3206 avoid divide by zero when threshold is graphMi...
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/tasks/JAL-3035_rem...
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
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commitdiff
2019-03-04
gmungoc
JAL-3205 worked examples in unit test for symmetric...
tree
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commitdiff
2019-03-03
gmungoc
JAL-3205 one more unit test case
tree
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commitdiff
2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
tree
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commitdiff
2019-03-01
gmungoc
JAL-3093 unit test adapts to actual number of annotatio...
feature/JAL-3093wrappedModeTooltips
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-1244stretchStatusMsg' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3139colocatedFeatures' into develop
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3164complementOverview' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/intervalStoreJ' into merge/JAL...
tree
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commitdiff
2019-03-01
gmungoc
JAL-3140 reduced coupling to intervalstore.jar
feature/intervalStoreJ
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into merge...
tree
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commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
tree
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commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
tree
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commitdiff
2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
tree
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commitdiff
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