JAL-2069 fix minor bugs in variable setting
[jalview.git] / test /
2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour...
2017-11-16 gmungocJAL-2835 update test for array-valued attribute name
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute'
2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features...
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys
2017-11-15 gmungocJAL-1270 add missing "Functional" to tests
2017-11-14 Jim ProcterJAL-2758 update uniprot retrieval test
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into...
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains
2017-11-07 gmungocJAL-2069 corrected overloaded constructor behaviour
2017-11-07 gmungocJAL-2069 add attributeName and noValueColour to Feature...
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks
2017-11-07 gmungocJAL-2808 tweak to use Iterable for set of matchers
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou...
2017-11-06 gmungocJAL-2808 small tweak to getString to quote the pattern...
2017-11-02 gmungocJAL-2808 toString modified, tests corrected
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into
2017-10-31 gmungocJAL-2791 select columns by _visible_ features
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi...
2017-10-31 gmungocJAL-2792 test updated for 3 column table
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute...
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into...
2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop
2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour...
2017-10-11 gmungocJAL-2609 tests updated for revised label width
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocJAL-2225 updates for review comments, Checkstyle
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
2017-10-11 kiramtJAL-2742 test updates following review
2017-10-11 kiramtJAL-2742 minor test updates following review
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot
2017-10-06 gmungocJAL-2738 unit test for mapping failure case
2017-10-05 gmungocJAL-2738 helper method for convolving mappings
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript...
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two...
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin...
2017-09-26 kiramtJAL-2742 uncomment test
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi...
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple...
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF...
2017-09-14 gmungocJAL-2727 add SelectionGroup, Tree and PCA to test
2017-09-13 gmungocJAL-2727 alignment width and height tailored to this...
2017-09-12 gmungocJAL-2727 first pass of test of memory recovery on close all
2017-09-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-2722'... portforward/JAL-2675_2102b1to2103
2017-09-05 Jim ProcterMerge branch 'bug/JAL-2722' into releases/Release_2_10_...
2017-09-05 kiramtJAL-2722 unit test bug/JAL-2722
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-05 gmungocJAL-2225 unused collateForPdb removed
2017-09-05 gmungocJAL-2225 fix bug in collating unique pdb files and...
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-04 Jim ProcterMerge branch 'bug/JAL-2704gapColourFading' into documen...
2017-09-04 gmungocJAL-2617 unit tests for CDS + stop codon, CDS with... bug/JAL-2617mappedStopCodon
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2691_nomultimermapping' into...
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