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Merge branch 'develop' into features/JAL-4219_extended_fasta_rna_ss
[jalview.git] / utils /
2024-08-06 Ben SoaresJAL-3631 Made bespoke command line arguments for consol... tree | commitdiff
2024-08-06 Ben SoaresJAL-3631 Added install4j installer command line options... tree | commitdiff
2024-08-06 Ben SoaresJAL-3631 Important change to Execution Level in Windows... tree | commitdiff
2024-08-06 Ben SoaresJAL-3631 Short sleep added to 100% progress on installe... tree | commitdiff
2024-08-06 Ben SoaresJAL-3631 An attempt to add a Reset to defaults button... tree | commitdiff
2024-08-06 Ben SoaresJAL-3631 Some small but important changes to run_other_... tree | commitdiff
2024-08-05 Ben SoaresJAL-3631 JAL-4444 Change way we add the jalview_x and... tree | commitdiff
2024-08-05 Ben SoaresJAL-3631 Icons for installer wizard title bar tree | commitdiff
2024-08-05 Ben SoaresJAL-3631 update.ps1 has fixed Readlink-f function,... tree | commitdiff
2024-08-05 Ben SoaresJAL-3631 Revert the Jalview installer icon back to... tree | commitdiff
2024-08-05 Ben SoaresJAL-3631 Adjustment to wizard size (was too big in... tree | commitdiff
2024-08-02 Ben SoaresJAL-3631 made Readlink-f work in powershell. Need... tree | commitdiff
2024-08-02 Ben SoaresJAL-3631 update.sh script fixed to work in Windows... tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Administrator mode label on all screens of... tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Added a test for a specified update and a... tree | commitdiff
2024-08-01 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv... tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Small change to update.sh. update.ps1 NOT... tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Remove a debug echo tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Convert both CLASSPATHS in update.sh tree | commitdiff
2024-08-01 Ben SoaresJAL-3631 Separated jalview.sh and update.sh, and includ... tree | commitdiff
2024-08-01 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... tree | commitdiff
2024-07-31 Ben SoaresJAL-3631 Changes to bash launcher to allow headless... tree | commitdiff
2024-07-31 Ben SoaresJAL-3631 Add a (by-passable) confirmation and improved... tree | commitdiff
2024-07-29 Ben SoaresJAL-3631 Add --updateuser and --updateinstallation... tree | commitdiff
2024-07-29 Ben SoaresJAL-3631 Small corrections tree | commitdiff
2024-07-29 Ben SoaresJAL-3631 Ensure the DMG default vmoptions.txt has the... tree | commitdiff
2024-07-26 Ben SoaresJAL-3631 Added an --update option to the jalview.sh... tree | commitdiff
2024-07-26 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... tree | commitdiff
2024-07-26 Jim ProcterMerge branch 'patch/JAL-4428_osx_codesigning_scripts... tree | commitdiff
2024-07-26 Ben SoaresJAL-3631 Added verbose and quiet options, and matched... tree | commitdiff
2024-07-26 Ben SoaresJAL-3631 Some minor bugfixes to the install4j installer... tree | commitdiff
2024-07-25 Ben SoaresJAL-3631 Comprehensive install shell script for macos tree | commitdiff
2024-07-25 Ben SoaresJAL-3631 minor changes - spelling and comment spacing... tree | commitdiff
2024-07-24 Ben SoaresJAL-3631 Correct some text to add the file separator... tree | commitdiff
2024-07-23 Ben SoaresJAL-3631 Consolidated repeated code (mainly form verifi... tree | commitdiff
2024-07-22 Ben SoaresJAL-3631 Minor fixes to the advanced options scripts tree | commitdiff
2024-07-22 Ben SoaresJAL-3631 Made both Advanced options into a group. ... tree | commitdiff
2024-07-21 Ben SoaresJAL-3631 Improved tooltip on advanced options. Ensure... tree | commitdiff
2024-07-20 Ben SoaresJAL-3631 Group/box and simplify visibility of advanced... tree | commitdiff
2024-07-20 Ben SoaresJAL-3631 Consistently and correctly enable/diable/hide... tree | commitdiff
2024-07-19 Ben SoaresJAL-3631 Customise the user-space path in the install4j... tree | commitdiff
2024-07-17 Ben SoaresJAL-3631 Extensive working of options in install4j... tree | commitdiff
2024-07-01 Ben SoaresJAL-3631 Slightly larger wizard tree | commitdiff
2024-06-28 Ben SoaresJAL-3631 Made an isAdmin flag to work in Windows Admin... tree | commitdiff
2024-06-28 Ben SoaresJAL-3830 Added some quotation marks to jalview.bat... tree | commitdiff
2024-06-28 Ben SoaresJAL-3631 Remove the checkboxes from the Finish screen... tree | commitdiff
2024-06-28 Ben SoaresJAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and... tree | commitdiff
2024-06-28 Ben SoaresJAL-3631 Adjustments to the Windows installer tree | commitdiff
2024-06-27 Ben SoaresJAL-3631 Installers with separate actions for user... tree | commitdiff
2024-06-27 Ben SoaresJAL-3631 Log4j logging to .jalview.log file when reques... tree | commitdiff
2024-06-25 Ben SoaresJAL-3631 JAL-3384 Install4j launch now redirects STDOUT... tree | commitdiff
2024-06-25 Ben SoaresJAL-3631 Allow icon file name to be passed to launcher... tree | commitdiff
2024-06-21 Ben SoaresJAL-4409 Add two empty args to getdown call from instal... tree | commitdiff
2024-06-18 Ben SoaresJAL-3631 macos dev install script incorporated into... tree | commitdiff
2024-06-18 Ben SoaresJAL-3631 gradle-build-and-re-install script, works... tree | commitdiff
2024-06-18 Ben SoaresJAL-3631 Substantial additions to Getdown (through... tree | commitdiff
2024-06-17 Ben SoaresJAL-3631 Allow quick deployment of gradle build on... tree | commitdiff
2024-06-14 Ben SoaresJAL-3631 Got rid of the USER_EXECUTABLE_NAME as it... tree | commitdiff
2024-06-14 Ben SoaresJAL-3631 Removed old non-user launcher. Labelled USERSP... tree | commitdiff
2024-06-14 Ben SoaresJAL-3631 Allow -Pinstall4j_build_ids=MACOS-AARCH64... tree | commitdiff
2024-06-13 Ben SoaresJAL-3631 New Installer icons. Getdown check that the... tree | commitdiff
2024-06-12 Ben SoaresJAL-3631 Add a new launcher in install4j to pass new... tree | commitdiff
2024-06-07 Ben SoaresJAL-4421 Update the dev_masos_installer.sh to use new... bug/JAL-4421_customise_volume_name_of_DMG_installers tree | commitdiff
2024-06-06 Jim ProcterJAL-4428 added the signing and stapling scripts - not... tree | commitdiff
2024-06-05 Ben SoaresJAL-4421 Configuration for positioning icons in DMG tree | commitdiff
2024-06-05 Ben SoaresJAL-4421 Add --appname --appxpos --appypos to position... tree | commitdiff
2024-06-04 Ben SoaresJAL-4421 Remove the disk_image_alias from the backgroun... tree | commitdiff
2024-06-04 Ben SoaresJAL-4421 Allow JSON config file to be options (no icon... tree | commitdiff
2024-06-04 Ben SoaresJAL-4421 Put correct VolumeIcon.icns file onto DMG... tree | commitdiff
2024-06-03 Ben SoaresJAL-4421 Icns to use as .VolumeIcon.icns in DMG volumes... tree | commitdiff
2024-06-03 Ben SoaresJAL-4421 Also add DMG filename to python script. Necess... tree | commitdiff
2024-05-31 Ben SoaresJAL-4421 Add DS_Store customisation to gradle. Add... tree | commitdiff
2024-05-31 Ben SoaresJAL-4421 Python script for customising DS_Store. Separ... tree | commitdiff
2024-05-17 Ben SoaresJAL-4409 corrected the umount of dmg to hdiutil detach... tree | commitdiff
2024-05-16 Ben SoaresJAL-4409 Easier full install from source for macOS tree | commitdiff
2024-05-13 Ben SoaresJAL-4409 Fix some file extensions (including remove... tree | commitdiff
2024-05-13 Ben SoaresJAL-1054 Add wrappers for URL.openConnection(), URL... tree | commitdiff
2024-05-10 Ben SoaresJAL-4409 Add jalviewhttp and jalviewhttps schemes to... tree | commitdiff
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version... tree | commitdiff
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... tree | commitdiff
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0 tree | commitdiff
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-08-31 Ben SoaresJAL-3830 Remove dock icon for -h too improvement/JAL-3830_remove_dock_icon_in_headless_mode tree | commitdiff
2023-08-17 Ben SoaresJAL-3830 JAL-4160 Remove --noheadless as --gui does... tree | commitdiff
2023-08-16 Ben SoaresJAL-3830 JAL-3421 Conda launch script for 2.11.3 and... tree | commitdiff
2023-08-16 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_remove... tree | commitdiff
2023-08-16 Ben SoaresJAL-4160 JAL-3830 Improvements to the jalview.sh bash... tree | commitdiff
2023-07-28 Ben SoaresJAL-4064 Added more recognisable display names to macOS... tree | commitdiff
2023-07-22 James ProcterJAL-4243 Jalview 2.11.2.7’s biotool record as JSON... tree | commitdiff
2023-06-16 Ben SoaresJAL-3830 Take account of --gui taking precedence over... tree | commitdiff
2023-06-16 Ben SoaresJAL-3830 Look for --headless mode and add -Djava.awt... tree | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... tree | commitdiff
2023-06-02 Ben SoaresJAL-3521 Updated debian build.gradle in utils/debian... tree | commitdiff
2023-05-25 Ben SoaresJAL-3416 JAL-3820 FlatLaf default for everyone, includi... tree | commitdiff
2023-05-25 Ben SoaresJAL-3416 better path name tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching... tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... tree | commitdiff
2023-05-20 Ben SoaresJAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and... tree | commitdiff
2023-05-19 Ben SoaresJAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for... tree | commitdiff
2023-05-19 Ben SoaresJAL-629 Updated debian helpers for new command line tree | commitdiff
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