amwaterhouse [Fri, 24 Mar 2006 15:35:44 +0000 (15:35 +0000)]
Typo
amwaterhouse [Fri, 24 Mar 2006 15:35:31 +0000 (15:35 +0000)]
fr.transferSettings
amwaterhouse [Fri, 24 Mar 2006 15:35:10 +0000 (15:35 +0000)]
FeatureSettings bug fixed
amwaterhouse [Fri, 24 Mar 2006 15:34:48 +0000 (15:34 +0000)]
Feature added to group search results
amwaterhouse [Fri, 24 Mar 2006 15:34:21 +0000 (15:34 +0000)]
Groups compatibility
amwaterhouse [Fri, 24 Mar 2006 15:33:44 +0000 (15:33 +0000)]
No need to hava SSX as array
amwaterhouse [Fri, 24 Mar 2006 15:33:20 +0000 (15:33 +0000)]
CursoMode added
amwaterhouse [Fri, 24 Mar 2006 15:32:50 +0000 (15:32 +0000)]
Load data file added
amwaterhouse [Fri, 24 Mar 2006 15:32:22 +0000 (15:32 +0000)]
Trim line
amwaterhouse [Fri, 24 Mar 2006 15:32:08 +0000 (15:32 +0000)]
Features added to group Uniprot
amwaterhouse [Fri, 24 Mar 2006 15:31:42 +0000 (15:31 +0000)]
Add check if sequence already exists
amwaterhouse [Fri, 24 Mar 2006 15:31:11 +0000 (15:31 +0000)]
FeaturesGroup added to constructor
amwaterhouse [Fri, 24 Mar 2006 15:29:33 +0000 (15:29 +0000)]
1 too many
amwaterhouse [Fri, 24 Mar 2006 15:28:54 +0000 (15:28 +0000)]
Features added to group search results
amwaterhouse [Fri, 24 Mar 2006 15:28:30 +0000 (15:28 +0000)]
-1 +1 check removed
amwaterhouse [Fri, 24 Mar 2006 15:27:59 +0000 (15:27 +0000)]
1 too many in drawgraph
amwaterhouse [Fri, 24 Mar 2006 15:27:21 +0000 (15:27 +0000)]
Annotation colour scheme added
amwaterhouse [Fri, 24 Mar 2006 15:26:37 +0000 (15:26 +0000)]
Called from AnnotationColourChooser and Feature Settings
amwaterhouse [Fri, 24 Mar 2006 15:25:59 +0000 (15:25 +0000)]
Annotation colours added to applet
amwaterhouse [Fri, 24 Mar 2006 15:25:09 +0000 (15:25 +0000)]
ZSort no longer static
amwaterhouse [Fri, 24 Mar 2006 15:24:53 +0000 (15:24 +0000)]
Has own featurerenderer
amwaterhouse [Mon, 20 Mar 2006 14:48:50 +0000 (14:48 +0000)]
Rearranged text
amwaterhouse [Mon, 20 Mar 2006 14:42:37 +0000 (14:42 +0000)]
Correct reference
amwaterhouse [Mon, 20 Mar 2006 14:34:20 +0000 (14:34 +0000)]
typo
amwaterhouse [Mon, 20 Mar 2006 14:34:06 +0000 (14:34 +0000)]
Reference added
jprocter [Mon, 20 Mar 2006 10:02:06 +0000 (10:02 +0000)]
added example jnlp to memory settings help
jprocter [Mon, 20 Mar 2006 09:56:54 +0000 (09:56 +0000)]
added link to example jnlp file
jprocter [Mon, 20 Mar 2006 09:56:41 +0000 (09:56 +0000)]
example jnlp file for users to edit and save locally
jprocter [Fri, 17 Mar 2006 08:51:44 +0000 (08:51 +0000)]
jnet method description correction.
amwaterhouse [Thu, 16 Mar 2006 17:25:35 +0000 (17:25 +0000)]
Fix for Finn Drablos bug. Must use equals for comparing strings
amwaterhouse [Thu, 16 Mar 2006 15:31:36 +0000 (15:31 +0000)]
historyItem.restore
amwaterhouse [Thu, 16 Mar 2006 15:31:02 +0000 (15:31 +0000)]
HideSequences
amwaterhouse [Thu, 16 Mar 2006 15:30:41 +0000 (15:30 +0000)]
getWidth and getHeight just once
amwaterhouse [Thu, 16 Mar 2006 15:30:13 +0000 (15:30 +0000)]
-1 to drawGraphs
amwaterhouse [Thu, 16 Mar 2006 15:29:55 +0000 (15:29 +0000)]
isVisible and hiddenboundary added
amwaterhouse [Thu, 16 Mar 2006 15:29:34 +0000 (15:29 +0000)]
UserColors not used here
amwaterhouse [Thu, 16 Mar 2006 15:29:10 +0000 (15:29 +0000)]
Hidden Rows
amwaterhouse [Thu, 16 Mar 2006 15:28:57 +0000 (15:28 +0000)]
Reveal
amwaterhouse [Thu, 16 Mar 2006 15:28:41 +0000 (15:28 +0000)]
Faster
amwaterhouse [Thu, 16 Mar 2006 15:28:30 +0000 (15:28 +0000)]
Hide Sequences
amwaterhouse [Thu, 16 Mar 2006 15:28:13 +0000 (15:28 +0000)]
Tooltip for hidden columns
amwaterhouse [Thu, 16 Mar 2006 15:27:47 +0000 (15:27 +0000)]
Hidden column adjustments
amwaterhouse [Thu, 16 Mar 2006 15:27:23 +0000 (15:27 +0000)]
Scrolls when editing
amwaterhouse [Thu, 16 Mar 2006 15:21:58 +0000 (15:21 +0000)]
Gethidden sequences
amwaterhouse [Thu, 16 Mar 2006 15:21:24 +0000 (15:21 +0000)]
HiddenSequence methods
amwaterhouse [Thu, 16 Mar 2006 15:20:57 +0000 (15:20 +0000)]
getHiddenSequences
amwaterhouse [Thu, 16 Mar 2006 15:20:31 +0000 (15:20 +0000)]
Keeps a record of hidden sequences
amwaterhouse [Thu, 16 Mar 2006 15:19:24 +0000 (15:19 +0000)]
Allow loading from Zip files
amwaterhouse [Thu, 16 Mar 2006 15:18:55 +0000 (15:18 +0000)]
Load tree
amwaterhouse [Thu, 16 Mar 2006 15:18:17 +0000 (15:18 +0000)]
CandP takes AlignFrame, not applet
amwaterhouse [Thu, 16 Mar 2006 15:18:02 +0000 (15:18 +0000)]
Fastpaint updates
amwaterhouse [Thu, 16 Mar 2006 15:17:14 +0000 (15:17 +0000)]
Check endres when drawing graphs
amwaterhouse [Thu, 16 Mar 2006 15:16:45 +0000 (15:16 +0000)]
Cut and paste may be inserted into Dialog frame
amwaterhouse [Thu, 16 Mar 2006 15:16:21 +0000 (15:16 +0000)]
Fastest implementation so far
amwaterhouse [Thu, 16 Mar 2006 15:16:03 +0000 (15:16 +0000)]
Extra argument false
amwaterhouse [Thu, 16 Mar 2006 15:15:18 +0000 (15:15 +0000)]
Scroll implemented for applet editing
amwaterhouse [Thu, 16 Mar 2006 15:15:05 +0000 (15:15 +0000)]
Selection Group rendering updated
amwaterhouse [Thu, 16 Mar 2006 15:14:28 +0000 (15:14 +0000)]
Reduced arguments for speed
amwaterhouse [Thu, 16 Mar 2006 15:14:09 +0000 (15:14 +0000)]
Can be used for user features
amwaterhouse [Thu, 16 Mar 2006 15:13:55 +0000 (15:13 +0000)]
Add new feature from seqrch results
amwaterhouse [Thu, 16 Mar 2006 15:13:43 +0000 (15:13 +0000)]
Feature rendering in groups
amwaterhouse [Thu, 16 Mar 2006 15:12:26 +0000 (15:12 +0000)]
Out of bounds check
jprocter [Thu, 16 Mar 2006 10:24:50 +0000 (10:24 +0000)]
added description of alignment quality scores and separated
description of conservation calculation from the instructions for
colouring alignments by it.
jprocter [Tue, 14 Mar 2006 11:22:04 +0000 (11:22 +0000)]
methods for searching DBRef lists
jprocter [Mon, 13 Mar 2006 16:52:54 +0000 (16:52 +0000)]
fixes bug 0013013 but reveals lack of a 'features retrieved' flag that should be set when a sequence's uniprot record has been retrieved and all its sequence features have been added.
jprocter [Mon, 13 Mar 2006 16:46:36 +0000 (16:46 +0000)]
bug fix for 0013013
amwaterhouse [Wed, 8 Mar 2006 17:04:57 +0000 (17:04 +0000)]
Sequences can have a description
amwaterhouse [Wed, 8 Mar 2006 17:04:41 +0000 (17:04 +0000)]
Features may belong to a feature group
amwaterhouse [Wed, 8 Mar 2006 16:58:51 +0000 (16:58 +0000)]
IdentifyFile should not be static
amwaterhouse [Wed, 8 Mar 2006 16:58:16 +0000 (16:58 +0000)]
Can read from zip file
amwaterhouse [Wed, 8 Mar 2006 16:55:43 +0000 (16:55 +0000)]
Blank space is white
amwaterhouse [Wed, 8 Mar 2006 16:55:30 +0000 (16:55 +0000)]
Reveal All added
amwaterhouse [Wed, 8 Mar 2006 16:54:51 +0000 (16:54 +0000)]
<= fastPaints hidden columns
amwaterhouse [Wed, 8 Mar 2006 16:54:28 +0000 (16:54 +0000)]
Check for visibleGroup==null
amwaterhouse [Wed, 8 Mar 2006 16:53:36 +0000 (16:53 +0000)]
IdentfyFile should not be static
amwaterhouse [Wed, 8 Mar 2006 16:53:18 +0000 (16:53 +0000)]
RevealAllHiddenColumns
amwaterhouse [Wed, 8 Mar 2006 16:52:59 +0000 (16:52 +0000)]
Allow for hidden columns
amwaterhouse [Wed, 8 Mar 2006 16:51:44 +0000 (16:51 +0000)]
Able to read resources from Zip file
amwaterhouse [Wed, 8 Mar 2006 16:50:34 +0000 (16:50 +0000)]
Blank space is white
amwaterhouse [Wed, 8 Mar 2006 16:49:09 +0000 (16:49 +0000)]
PASTE is constant in AppletFormatAdapter
amwaterhouse [Wed, 8 Mar 2006 16:48:32 +0000 (16:48 +0000)]
Pack resources in Zip file
jprocter [Wed, 1 Mar 2006 16:23:15 +0000 (16:23 +0000)]
fixed after refactoring of SequenceFeature[] seq.getSequenceFeatures
jprocter [Wed, 1 Mar 2006 14:03:52 +0000 (14:03 +0000)]
propagate SearchResult object use to MCView's highlighted residue renderer.
amwaterhouse [Fri, 24 Feb 2006 11:48:23 +0000 (11:48 +0000)]
P1 changed to N1
amwaterhouse [Fri, 24 Feb 2006 11:47:51 +0000 (11:47 +0000)]
Add Annotation to specific sequence
amwaterhouse [Fri, 24 Feb 2006 11:47:03 +0000 (11:47 +0000)]
Cannot delete residues
amwaterhouse [Fri, 24 Feb 2006 11:46:41 +0000 (11:46 +0000)]
Features now array
amwaterhouse [Fri, 24 Feb 2006 11:45:36 +0000 (11:45 +0000)]
Keeps original threshold value
amwaterhouse [Fri, 24 Feb 2006 11:44:59 +0000 (11:44 +0000)]
setShowSequenceFeatures
amwaterhouse [Fri, 24 Feb 2006 11:44:36 +0000 (11:44 +0000)]
First attempt at hidden regions
amwaterhouse [Fri, 24 Feb 2006 11:44:20 +0000 (11:44 +0000)]
Less args, faster rendering
amwaterhouse [Fri, 24 Feb 2006 11:44:02 +0000 (11:44 +0000)]
Features now an array
amwaterhouse [Fri, 24 Feb 2006 11:43:25 +0000 (11:43 +0000)]
First attempt to install hidden regions
amwaterhouse [Fri, 24 Feb 2006 11:42:57 +0000 (11:42 +0000)]
Use add seq feature instead of replacing existing features
amwaterhouse [Fri, 24 Feb 2006 11:41:38 +0000 (11:41 +0000)]
Features added
amwaterhouse [Fri, 24 Feb 2006 11:41:26 +0000 (11:41 +0000)]
Features now array for speed of rendering
amwaterhouse [Fri, 24 Feb 2006 11:40:45 +0000 (11:40 +0000)]
Use add feature instead of replacing existing values
amwaterhouse [Fri, 24 Feb 2006 11:40:07 +0000 (11:40 +0000)]
Features now array
amwaterhouse [Fri, 24 Feb 2006 11:39:40 +0000 (11:39 +0000)]
Use annotation colour for graph
amwaterhouse [Fri, 24 Feb 2006 11:39:09 +0000 (11:39 +0000)]
Make variable public for speed of rendering
git://source.jalview.org / jalview.git / log