jalview.git
5 years agoMerge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_21...
Jim Procter [Mon, 15 Jul 2019 16:21:05 +0000 (17:21 +0100)]
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_212_alpha

5 years agoJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop
Thomas [Fri, 12 Jul 2019 14:46:32 +0000 (15:46 +0100)]
JAL-2629 can now choose number of jackhmmer iterations

5 years agoJAL-2629 fix faulty label in a MessageManager.getString() call
Thomas [Fri, 12 Jul 2019 13:44:44 +0000 (14:44 +0100)]
JAL-2629 fix faulty label in a MessageManager.getString() call

5 years agoJAL-2629 add sort by evalue and bit score
Thomas [Fri, 12 Jul 2019 13:43:55 +0000 (14:43 +0100)]
JAL-2629 add sort by evalue and bit score

5 years agoJAL-2629 hmmer searches now read domain rather than full scores
Thomas [Fri, 12 Jul 2019 13:42:48 +0000 (14:42 +0100)]
JAL-2629 hmmer searches now read domain rather than full scores

5 years agoMerge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_21...
Jim Procter [Thu, 11 Jul 2019 15:59:28 +0000 (16:59 +0100)]
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_212_alpha

5 years agoJAL-2629 hmmer searches include seqs past inclusion threshold in output
Thomas [Thu, 11 Jul 2019 14:11:52 +0000 (15:11 +0100)]
JAL-2629 hmmer searches include seqs past inclusion threshold in output

5 years agoJAL-2629 hmm search UI and structural improvements, inclusion thresholds
Thomas [Thu, 11 Jul 2019 13:47:42 +0000 (14:47 +0100)]
JAL-2629 hmm search UI and structural improvements, inclusion thresholds

5 years agoJAL-3070 standard way of storing/recovering documentation URL for service
Jim Procter [Wed, 10 Jul 2019 16:46:23 +0000 (17:46 +0100)]
JAL-3070 standard way of storing/recovering documentation URL for service

5 years agoJAL-3070 remove final reference to Jws2Instance
Jim Procter [Wed, 10 Jul 2019 16:33:25 +0000 (17:33 +0100)]
JAL-3070 remove final reference to Jws2Instance

5 years agoJAL-2629 fix hmmsearch/jackhmmer assigning incorrect evalues and scores
tva [Wed, 10 Jul 2019 15:49:50 +0000 (16:49 +0100)]
JAL-2629 fix hmmsearch/jackhmmer assigning incorrect evalues and scores

5 years agoMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha/JAL-3362_Jalview_212_alpha
Jim Procter [Wed, 10 Jul 2019 14:53:07 +0000 (15:53 +0100)]
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha/JAL-3362_Jalview_212_alpha

5 years agoJAL-2629 fix hmsearch and jackhmmer not being able to search alignment
tva [Wed, 10 Jul 2019 14:39:41 +0000 (15:39 +0100)]
JAL-2629 fix hmsearch and jackhmmer not being able to search alignment

5 years agoJAL-2629 hmmsearch # of new sequences now only displayed when specified
tva [Wed, 10 Jul 2019 14:12:58 +0000 (15:12 +0100)]
JAL-2629 hmmsearch # of new sequences now only displayed when specified

5 years agoJAL-2629 fix incorrect hmmbuild on groups behaviour
tva [Wed, 10 Jul 2019 13:41:40 +0000 (14:41 +0100)]
JAL-2629 fix incorrect hmmbuild on groups behaviour

5 years agoJAL-3289 bamboo properties for ‘BUILD’ getdown channel - fix
Jim Procter [Wed, 10 Jul 2019 13:09:18 +0000 (14:09 +0100)]
JAL-3289 bamboo properties for ‘BUILD’ getdown channel - fix

5 years agoJAL-3289 bamboo properties for ‘BUILD’ getdown channel
Jim Procter [Wed, 10 Jul 2019 12:55:56 +0000 (13:55 +0100)]
JAL-3289 bamboo properties for ‘BUILD’ getdown channel

5 years agoMerge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_21...
Jim Procter [Wed, 10 Jul 2019 12:05:46 +0000 (13:05 +0100)]
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop' into alpha/JAL-3362_Jalview_212_alpha

5 years agoJAL-2629 fix hmmsearch/jackhmmer being unable to search through DB file
tva [Wed, 10 Jul 2019 12:05:12 +0000 (13:05 +0100)]
JAL-2629 fix hmmsearch/jackhmmer being unable to search through DB file

5 years agoJAL-2629 uniquify all hmmer command sequence outputs
tva [Fri, 5 Jul 2019 14:59:00 +0000 (15:59 +0100)]
JAL-2629 uniquify all hmmer command sequence outputs

5 years agoJAL-2629 fix file format issues preventing hmmsearch, jackhmmer running
tva [Fri, 5 Jul 2019 09:58:52 +0000 (10:58 +0100)]
JAL-2629 fix file format issues preventing hmmsearch, jackhmmer running

5 years agoJAL-1544 fixed a html encoding of '<' (%lt; -> &lt;) in commandline.html
Ben Soares [Fri, 5 Jul 2019 09:43:30 +0000 (10:43 +0100)]
JAL-1544 fixed a html encoding of '<' (%lt; -> &lt;) in commandline.html

5 years agoJAL-3111 correct JVL appbase for 2.10.5 via getdown
Jim Procter [Thu, 4 Jul 2019 15:40:13 +0000 (16:40 +0100)]
JAL-3111 correct JVL appbase for 2.10.5 via getdown

5 years agoMerge branch 'task/JAL-3337-rm-lib-update-sourceDist' into develop
Jim Procter [Thu, 4 Jul 2019 15:34:12 +0000 (16:34 +0100)]
Merge branch 'task/JAL-3337-rm-lib-update-sourceDist' into develop

5 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Thu, 4 Jul 2019 15:33:48 +0000 (16:33 +0100)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

5 years agoJAL-3337 round-and-round the process source files again
Jim Procter [Thu, 4 Jul 2019 15:31:47 +0000 (16:31 +0100)]
JAL-3337 round-and-round the process source files again

5 years agoJAL-3337 more includes and excludes
Jim Procter [Thu, 4 Jul 2019 15:23:16 +0000 (16:23 +0100)]
JAL-3337 more includes and excludes

5 years agoJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist
Jim Procter [Thu, 4 Jul 2019 14:52:05 +0000 (15:52 +0100)]
JAL-3337 remove the old lib directory !

5 years agoJAL-3337 rejig the source distribution generation to process and replace tokens in...
Jim Procter [Thu, 4 Jul 2019 14:51:28 +0000 (15:51 +0100)]
JAL-3337 rejig the source distribution generation to process and replace tokens in source files

5 years agoJAL-3111 replace year in header for help pages and put processed help in build/distri...
Jim Procter [Thu, 4 Jul 2019 14:36:07 +0000 (15:36 +0100)]
JAL-3111 replace year in header for help pages and put processed help in build/distributions

5 years agoJAL-3225 try/catch for non-deprecated/deprecated property in sourceDist which is...
Ben Soares [Thu, 4 Jul 2019 13:43:47 +0000 (14:43 +0100)]
JAL-3225 try/catch for non-deprecated/deprecated property in sourceDist which is not available on older eclipses

5 years agoJAL-3353 Change to build.gradle to use the file:// enabled getdown-launcher-local...
Ben Soares [Thu, 4 Jul 2019 13:16:14 +0000 (14:16 +0100)]
JAL-3353 Change to build.gradle to use the file:// enabled getdown-launcher-local.jar for LOCAL and ARCHIVELOCAL builds only. Otherwise the getdown-launcher.jar (with no local file enabled) will be used

5 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Thu, 4 Jul 2019 12:09:21 +0000 (13:09 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

5 years agoJAL-3111 help pages minor corrections
gmungoc [Thu, 4 Jul 2019 12:09:13 +0000 (13:09 +0100)]
JAL-3111 help pages minor corrections

5 years agoJAL-3348 fixed an internal href in help to allow building
Ben Soares [Thu, 4 Jul 2019 11:26:37 +0000 (12:26 +0100)]
JAL-3348 fixed an internal href in help to allow building

5 years agoJAL-3337 adjusted building doc as sourceDist uses gradle 5.2 or above properties
Ben Soares [Thu, 4 Jul 2019 11:25:43 +0000 (12:25 +0100)]
JAL-3337 adjusted building doc as sourceDist uses gradle 5.2 or above properties

5 years agoMerge branch 'task/JAL-3348_document_cli_memory_settings_when_launching_jalview'...
Jim Procter [Thu, 4 Jul 2019 08:08:21 +0000 (09:08 +0100)]
Merge branch 'task/JAL-3348_document_cli_memory_settings_when_launching_jalview' into develop

5 years agoJAL-3111 JAL-3348 JVL file documentation
Jim Procter [Thu, 4 Jul 2019 08:05:12 +0000 (09:05 +0100)]
JAL-3111 JAL-3348 JVL file documentation

5 years agoJAL-3348 revised bsoares memory settings documentation and updated docs for launching...
Jim Procter [Thu, 4 Jul 2019 07:36:42 +0000 (08:36 +0100)]
JAL-3348 revised bsoares memory settings documentation and updated docs for launching jalview from command line

5 years agoMerge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching...
Ben Soares [Thu, 4 Jul 2019 00:04:51 +0000 (01:04 +0100)]
Merge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching_jalview

merging in develop

5 years agoJAL-3348 memory.html documentation finished for 2.11.0
Ben Soares [Wed, 3 Jul 2019 23:59:39 +0000 (00:59 +0100)]
JAL-3348 memory.html documentation finished for 2.11.0

5 years agoJAL-3348 jvmmempc in jvl file now works in linux
Ben Soares [Wed, 3 Jul 2019 22:42:35 +0000 (23:42 +0100)]
JAL-3348 jvmmempc in jvl file now works in linux

5 years agoJAL-3348 jvmmempc multiple values shouldn't be merged
Ben Soares [Wed, 3 Jul 2019 22:14:41 +0000 (23:14 +0100)]
JAL-3348 jvmmempc multiple values shouldn't be merged

5 years agoJAL-3111 tidy up lists/indentation for release notes
Jim Procter [Wed, 3 Jul 2019 19:58:37 +0000 (20:58 +0100)]
JAL-3111 tidy up lists/indentation for release notes

5 years agoJAL-3111 Java 11 only and 'onwards'
Jim Procter [Wed, 3 Jul 2019 17:36:25 +0000 (18:36 +0100)]
JAL-3111 Java 11 only and 'onwards'

5 years agoJAL-3111 more whatsNew tweaks
Jim Procter [Wed, 3 Jul 2019 17:35:15 +0000 (18:35 +0100)]
JAL-3111 more whatsNew tweaks

5 years agoMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help2Website' into develop
Jim Procter [Wed, 3 Jul 2019 17:06:46 +0000 (18:06 +0100)]
Merge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help2Website' into develop

5 years agoJAL-3111 more whats new
Jim Procter [Wed, 3 Jul 2019 17:05:14 +0000 (18:05 +0100)]
JAL-3111 more whats new

5 years agoJAL-3348 start of new memory setting text
Ben Soares [Wed, 3 Jul 2019 16:24:57 +0000 (17:24 +0100)]
JAL-3348 start of new memory setting text

5 years agoJAL-3348 jvmmempc allowed in jvl file
Ben Soares [Wed, 3 Jul 2019 16:06:55 +0000 (17:06 +0100)]
JAL-3348 jvmmempc allowed in jvl file

5 years agoMerge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching...
Ben Soares [Wed, 3 Jul 2019 15:24:54 +0000 (16:24 +0100)]
Merge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching_jalview

merging in develop

5 years agoMerge branch 'documentation/JAL-2843_featureFiltersFormat' into develop
Jim Procter [Wed, 3 Jul 2019 12:58:20 +0000 (13:58 +0100)]
Merge branch 'documentation/JAL-2843_featureFiltersFormat' into develop

5 years agoJAL-2629 fix search scores being read in incorrectly
tva [Wed, 3 Jul 2019 12:45:22 +0000 (13:45 +0100)]
JAL-2629 fix search scores being read in incorrectly

5 years agoJAL-2629 fix hmm on alignment being deleted upon running jackhmmer
tva [Wed, 3 Jul 2019 12:44:36 +0000 (13:44 +0100)]
JAL-2629 fix hmm on alignment being deleted upon running jackhmmer

5 years agoJAL-2629 evalues and bit scores now conserved after hmmalign is run
tva [Wed, 3 Jul 2019 11:16:50 +0000 (12:16 +0100)]
JAL-2629 evalues and bit scores now conserved after hmmalign is run

5 years agoJAL-2629 removed empty line produced under sequence report
tva [Wed, 3 Jul 2019 10:12:48 +0000 (11:12 +0100)]
JAL-2629 removed empty line produced under sequence report

5 years agoJAL-2629 can now filter by sequence e-value or bit score
tva [Wed, 3 Jul 2019 10:07:33 +0000 (11:07 +0100)]
JAL-2629 can now filter by sequence e-value or bit score

5 years agoJAL-3348 prepping getdown to pass JVM command line args
Ben Soares [Wed, 3 Jul 2019 00:36:50 +0000 (01:36 +0100)]
JAL-3348 prepping getdown to pass JVM command line args

5 years agoJAL-3111 updated what’s new… still more to come !
Jim Procter [Tue, 2 Jul 2019 22:35:18 +0000 (23:35 +0100)]
JAL-3111 updated what’s new… still more to come !

5 years agoJAL-3111 updated privacy statement to remove mention of JNLP version checker JAL...
Jim Procter [Tue, 2 Jul 2019 22:34:46 +0000 (23:34 +0100)]
JAL-3111 updated privacy statement to remove mention of JNLP version checker JAL-3280

5 years agoJAL-3111 JAL-3150 revised Jalview archive documentation and noted instructions about...
Jim Procter [Tue, 2 Jul 2019 22:30:52 +0000 (23:30 +0100)]
JAL-3111 JAL-3150 revised Jalview archive documentation and noted instructions about converting Jalview project files pre Jalview 2.1.

5 years agoJAL-3111 JAL-3348 removed pre 2.11 instructions on setting Jalview’s memory settings...
Jim Procter [Tue, 2 Jul 2019 22:20:04 +0000 (23:20 +0100)]
JAL-3111 JAL-3348 removed pre 2.11 instructions on setting Jalview’s memory settings. Needs information about configuring proportion of memory allocated.

5 years agoJAL-3111 JAL-3280 hide the version check preference option in ‘Connections’ tab
Jim Procter [Tue, 2 Jul 2019 22:18:13 +0000 (23:18 +0100)]
JAL-3111 JAL-3280 hide the version check preference option in ‘Connections’ tab

5 years agoJAL-3111 tidied up preferences dialog documentation
Jim Procter [Tue, 2 Jul 2019 22:11:00 +0000 (23:11 +0100)]
JAL-3111 tidied up preferences dialog documentation

5 years agoJAL-3111 fix broken helpTOC link
Jim Procter [Tue, 2 Jul 2019 20:21:09 +0000 (21:21 +0100)]
JAL-3111 fix broken helpTOC link

5 years agoMerge branch 'tasks/JAL-3311_removeVamsasMenu' into develop
Jim Procter [Tue, 2 Jul 2019 20:19:46 +0000 (21:19 +0100)]
Merge branch 'tasks/JAL-3311_removeVamsasMenu' into develop

5 years agoMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
Jim Procter [Tue, 2 Jul 2019 19:47:52 +0000 (20:47 +0100)]
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu

5 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Tue, 2 Jul 2019 19:26:50 +0000 (20:26 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

merging in develop

5 years agoJAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced jersey-*-1.19.jar with jersey...
Ben Soares [Tue, 2 Jul 2019 19:16:01 +0000 (20:16 +0100)]
JAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced jersey-*-1.19.jar with jersey-*-1.19.4.jar in j8lib.  Removed lib/ folder from sourceDist.  Added instructions for running testNG with a specific group of tests to building.md

5 years agoJAL-3111 release date now 4th July 2019 - codename 'bastille'
Jim Procter [Tue, 2 Jul 2019 15:06:55 +0000 (16:06 +0100)]
JAL-3111 release date now 4th July 2019 - codename 'bastille'

5 years agoMerge branch 'documentation/JAL-3111_release_211' into develop
Jim Procter [Tue, 2 Jul 2019 14:34:10 +0000 (15:34 +0100)]
Merge branch 'documentation/JAL-3111_release_211' into develop

5 years agoJAL-3111 formatting
Jim Procter [Tue, 2 Jul 2019 14:33:20 +0000 (15:33 +0100)]
JAL-3111 formatting

5 years agoJAL-3111 new known defect from JAL-797
Jim Procter [Tue, 2 Jul 2019 14:32:53 +0000 (15:32 +0100)]
JAL-3111 new known defect from JAL-797

5 years agoJAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889 JAL-3287 JAL-3289 JAL-3288
Jim Procter [Tue, 2 Jul 2019 14:30:11 +0000 (15:30 +0100)]
JAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889 JAL-3287 JAL-3289 JAL-3288

5 years agoJAL-3111 whats new and JAL-2738 JAL-2743 expanded help documentation for VCF
Jim Procter [Tue, 2 Jul 2019 14:28:19 +0000 (15:28 +0100)]
JAL-3111 whats new and JAL-2738 JAL-2743 expanded help documentation for VCF

5 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Tue, 2 Jul 2019 12:34:30 +0000 (13:34 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

Merging in develop

5 years agoJAL-3337 Excluding j11modDir from source distribution (has some older version jars...
Ben Soares [Tue, 2 Jul 2019 12:34:23 +0000 (13:34 +0100)]
JAL-3337 Excluding j11modDir from source distribution (has some older version jars converted to mods and none of these files are used in the build -- jars are all in j11libDir and used as libs not mods).

5 years agoJAL-3337 Updated the j11lib jars (don't need to be converted to modules) that aren...
Ben Soares [Tue, 2 Jul 2019 12:30:43 +0000 (13:30 +0100)]
JAL-3337 Updated the j11lib jars (don't need to be converted to modules) that aren't in j8libs. Added licensing information for these jars to THIRDPARTYLIBS.

5 years agoJAL-3337 gradle.properties for publish help as html pages
Jim Procter [Tue, 2 Jul 2019 12:25:22 +0000 (13:25 +0100)]
JAL-3337 gradle.properties for publish help as html pages

5 years agoJAL-3337 publish help as html pages with GA tracker (ant task rescued from old build...
Jim Procter [Tue, 2 Jul 2019 11:01:57 +0000 (12:01 +0100)]
JAL-3337 publish help as html pages with GA tracker (ant task rescued from old build system)

5 years agoJAL-2629 hmm match score colour scheme now colours by length
tva [Tue, 2 Jul 2019 09:31:17 +0000 (10:31 +0100)]
JAL-2629 hmm match score colour scheme now colours by length

5 years agoJAL-2629 add simple jackhmmer functionality
tva [Tue, 2 Jul 2019 09:30:46 +0000 (10:30 +0100)]
JAL-2629 add simple jackhmmer functionality

5 years agoJAL-3337 starting to add to THIRDPARTYLIBS
Ben Soares [Tue, 2 Jul 2019 08:53:37 +0000 (09:53 +0100)]
JAL-3337 starting to add to THIRDPARTYLIBS

5 years agoJAL-3322 increase concurrent downloads in getdown
Ben Soares [Mon, 1 Jul 2019 23:07:23 +0000 (00:07 +0100)]
JAL-3322 increase concurrent downloads in getdown

5 years agoJAL-3333 removed unused variable
Ben Soares [Mon, 1 Jul 2019 15:40:37 +0000 (16:40 +0100)]
JAL-3333 removed unused variable

5 years agoJAL-3337 Added some more files to source tar.gz file
Ben Soares [Mon, 1 Jul 2019 15:19:50 +0000 (16:19 +0100)]
JAL-3337 Added some more files to source tar.gz file

5 years agoJAL-3337 added gzip compression. Archive filename now matches the ones in docroot...
Ben Soares [Mon, 1 Jul 2019 14:57:53 +0000 (15:57 +0100)]
JAL-3337 added gzip compression. Archive filename now matches the ones in docroot/source/ when using -PJALVIEW_VERSION=...

5 years agoJAL-3322 getdown jars with network timeouts applied
Ben Soares [Mon, 1 Jul 2019 14:35:30 +0000 (15:35 +0100)]
JAL-3322 getdown jars with network timeouts applied

5 years agoJAL-3332 Sensible default timeout values for network connections (8s connect_timeout...
Ben Soares [Mon, 1 Jul 2019 14:21:00 +0000 (15:21 +0100)]
JAL-3332 Sensible default timeout values for network connections (8s connect_timeout, 15s read_timeout)

5 years agoJAL-3333 using floats for smoother weighting
Ben Soares [Mon, 1 Jul 2019 11:27:01 +0000 (12:27 +0100)]
JAL-3333 using floats for smoother weighting

5 years agoJAL-3337 added sourceDist task to gradle. Creates tar file in builds/distribution...
Ben Soares [Mon, 1 Jul 2019 10:50:33 +0000 (11:50 +0100)]
JAL-3337 added sourceDist task to gradle.  Creates tar file in builds/distribution/jalview-source-JALVIEW_VERSION.tar

5 years agoJAL-3337 update to JAVA-11-README to state current Java 11 build
Ben Soares [Mon, 1 Jul 2019 10:49:37 +0000 (11:49 +0100)]
JAL-3337 update to JAVA-11-README to state current Java 11 build

5 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Mon, 1 Jul 2019 09:17:31 +0000 (10:17 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

update merging develop into this branch

5 years agoJAL-3333 Sorry couldn't resist adding a bit of weighting to the rotation
Ben Soares [Sat, 29 Jun 2019 12:48:25 +0000 (13:48 +0100)]
JAL-3333 Sorry couldn't resist adding a bit of weighting to the rotation

5 years agoJAL-3333 Title text now appears instantly. Altering speed of rotating logo depending...
Ben Soares [Sat, 29 Jun 2019 00:52:43 +0000 (01:52 +0100)]
JAL-3333 Title text now appears instantly. Altering speed of rotating logo depending on queuing or running status. Rotating logo now 'parks' rather than jumps at completion.

5 years agoMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojav...
Ben Soares [Fri, 28 Jun 2019 16:27:40 +0000 (17:27 +0100)]
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojave' into develop

Merging in simple change from transparent image to white background and removing alpha channel in image model.

5 years agoJAL-3333 changed RGB model. Tested in mojave and Windows (works)
Ben Soares [Fri, 28 Jun 2019 16:27:03 +0000 (17:27 +0100)]
JAL-3333 changed RGB model.  Tested in mojave and Windows (works)

5 years agoJAL-3111 release notes for JAL-3330 JAL-3021 (tweak) and JAL-3333
Jim Procter [Fri, 28 Jun 2019 16:08:30 +0000 (17:08 +0100)]
JAL-3111 release notes for JAL-3330 JAL-3021 (tweak) and JAL-3333

5 years agoJAL-2629 add ability to add background frequencies to a HMM
tva [Fri, 28 Jun 2019 15:49:41 +0000 (16:49 +0100)]
JAL-2629 add ability to add background frequencies to a HMM

5 years agoJAL-3337 start of a Tar task
Ben Soares [Fri, 28 Jun 2019 15:39:09 +0000 (16:39 +0100)]
JAL-3337 start of a Tar task