jalview.git
2 months agoJAL-3631 Allow unixBinDir (where a symbolic link gets made) to be set in response...
Ben Soares [Wed, 28 Aug 2024 12:17:06 +0000 (13:17 +0100)]
JAL-3631 Allow unixBinDir (where a symbolic link gets made) to be set in response.varfile.  If it's not set or empty then the usual (dynamic) default will be ascertained.  Disallow reading in certain variables from the response.varfile that would just mess up the installation if changed.

2 months agoJAL-3631 Configuration tweaks if using the response.varfile
Ben Soares [Wed, 28 Aug 2024 11:41:37 +0000 (12:41 +0100)]
JAL-3631 Configuration tweaks if using the response.varfile

2 months agoJAL-3631 Adjustments to allow setting the Advanced options in the response.varfile...
Ben Soares [Wed, 28 Aug 2024 10:53:00 +0000 (11:53 +0100)]
JAL-3631 Adjustments to allow setting the Advanced options in the response.varfile. Also big improvement on setting sys.fileAssociation.launchers automatically so only sys.fileAssociation.extensions needs to be set in a response.varfile.

2 months agoJAL-3631 Fix interpolatove quotation marks in grep in jalview.sh. Fix some folder...
Ben Soares [Mon, 26 Aug 2024 18:36:56 +0000 (19:36 +0100)]
JAL-3631 Fix interpolatove quotation marks in grep in jalview.sh.  Fix some folder name trailing slash checks in macos_install_jalview.sh, add ditto -v and more informative output.

2 months agoJAL-3631 Fix interpolative quotation marks in new grep
Ben Soares [Mon, 26 Aug 2024 18:31:43 +0000 (19:31 +0100)]
JAL-3631 Fix interpolative quotation marks in new grep

2 months agoJAL-3631 When appdir/jre can't be found, look for the installer.appdir found in insta...
Ben Soares [Mon, 26 Aug 2024 16:44:30 +0000 (17:44 +0100)]
JAL-3631 When appdir/jre can't be found, look for the installer.appdir found in installer.properties (if it exists) and use jre dir in installer.appdir

2 months agoJAL-3631 Create an installer.properties file in the userappdir
Ben Soares [Mon, 26 Aug 2024 16:43:29 +0000 (17:43 +0100)]
JAL-3631 Create an installer.properties file in the userappdir

2 months agoJAL-3631 Change macos-install-jalview.sh to use ditto instead of rsync. Localise...
Ben Soares [Mon, 19 Aug 2024 16:08:12 +0000 (17:08 +0100)]
JAL-3631 Change macos-install-jalview.sh to use ditto instead of  Localise function vars.

2 months agoJAL-3631 Fix EnvConfig.getUserAppdir() in getdown when running the getdown-launcher...
Ben Soares [Fri, 16 Aug 2024 11:06:50 +0000 (12:06 +0100)]
JAL-3631 Fix EnvConfig.getUserAppdir() in getdown when running the getdown-launcher.jar update

2 months agoJAL-3631 Create a jalview_x_update link in appdir/bin alongside jalview_x in install4...
Ben Soares [Thu, 15 Aug 2024 20:31:02 +0000 (21:31 +0100)]
JAL-3631 Create a jalview_x_update link in appdir/bin alongside jalview_x in install4j wizard

2 months agoMerge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_di...
Ben Soares [Thu, 15 Aug 2024 20:18:52 +0000 (21:18 +0100)]
Merge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_directory

2 months agoJAL-4111 Remove unnecessary dependency on gradle-imagemagick plugin, as causing probl...
Ben Soares [Tue, 13 Aug 2024 17:50:44 +0000 (18:50 +0100)]
JAL-4111 Remove unnecessary dependency on gradle-imagemagick plugin, as causing problems in repo on Windows

2 months agoMerge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_di...
Ben Soares [Mon, 12 Aug 2024 13:03:25 +0000 (14:03 +0100)]
Merge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_directory

3 months agoJAL-3631 Better messaging and a root check on updating the --installation
Ben Soares [Thu, 8 Aug 2024 09:35:43 +0000 (10:35 +0100)]
JAL-3631 Better messaging and a root check on updating the --installation

3 months agoJAL-3631 Change name of update link in DMGs. Correct wrong message in macos installer...
Ben Soares [Thu, 8 Aug 2024 09:27:27 +0000 (10:27 +0100)]
JAL-3631 Change name of update link in DMGs. Correct wrong message in macos installer script.  Adding build_properties and channel.props into hidden folder on DMG. I'm sure they will be useful!

3 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Wed, 7 Aug 2024 16:31:16 +0000 (17:31 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

3 months agoJAL-3631 Made bespoke command line arguments for console or unattended installs only...
Ben Soares [Tue, 6 Aug 2024 23:50:30 +0000 (00:50 +0100)]
JAL-3631 Made bespoke command line arguments for console or unattended installs only (i.e. not GUI install mode), and work consistently with macos-install-jalview.sh

3 months agoJAL-3631 Added install4j installer command line options -a -u -U and -S to match...
Ben Soares [Tue, 6 Aug 2024 19:13:17 +0000 (20:13 +0100)]
JAL-3631 Added install4j installer command line options -a -u -U and -S to match the macos-install-jalview.sh script

3 months agoJAL-3631 Important change to Execution Level in Windows. Some disabled attempts at...
Ben Soares [Tue, 6 Aug 2024 18:02:25 +0000 (19:02 +0100)]
JAL-3631 Important change to Execution Level in Windows. Some disabled attempts at File Association Reset.

3 months agoJAL-3631 Short sleep added to 100% progress on installer wizard
Ben Soares [Tue, 6 Aug 2024 14:08:33 +0000 (15:08 +0100)]
JAL-3631 Short sleep added to 100% progress on installer wizard

3 months agoJAL-3631 An attempt to add a Reset to defaults button on the File Associations screen...
Ben Soares [Tue, 6 Aug 2024 12:29:17 +0000 (13:29 +0100)]
JAL-3631 An attempt to add a Reset to defaults button on the File Associations screen, but no joy (yet). Useful changes to customizedIds left in

3 months agoJAL-3631 Some small but important changes to run_other_script.ps1
Ben Soares [Tue, 6 Aug 2024 11:05:37 +0000 (12:05 +0100)]
JAL-3631 Some small but important changes to run_other_script.ps1

3 months agoJAL-3631 JAL-4444 Change way we add the jalview_x and jalview_x_update PS1 and BAT...
Ben Soares [Mon, 5 Aug 2024 22:49:05 +0000 (23:49 +0100)]
JAL-3631 JAL-4444 Change way we add the jalview_x and jalview_x_update PS1 and BAT files, moved into build.gradle and removed from install4j. Add title icon to install4j.

3 months agoJAL-3631 Icons for installer wizard title bar
Ben Soares [Mon, 5 Aug 2024 22:46:03 +0000 (23:46 +0100)]
JAL-3631 Icons for installer wizard title bar

3 months agoJAL-3631 update.ps1 has fixed Readlink-f function, works across platforms
Ben Soares [Mon, 5 Aug 2024 18:21:16 +0000 (19:21 +0100)]
JAL-3631 update.ps1 has fixed Readlink-f function, works across platforms

3 months agoJAL-3631 Revert the Jalview installer icon back to the Jalview icon
Ben Soares [Mon, 5 Aug 2024 18:20:46 +0000 (19:20 +0100)]
JAL-3631 Revert the Jalview installer icon back to the Jalview icon

3 months agoJAL-1551 source formatting and header
Jim Procter [Mon, 5 Aug 2024 17:42:04 +0000 (18:42 +0100)]
JAL-1551 source formatting and header

3 months agoJAL-1551 apply GPLv3 for source files
Jim Procter [Mon, 5 Aug 2024 15:17:48 +0000 (16:17 +0100)]
JAL-1551 apply GPLv3 for source files

3 months agoJAL-1551 gradle spotlessApply and doc tweaks
Jim Procter [Mon, 5 Aug 2024 15:14:37 +0000 (16:14 +0100)]
JAL-1551 gradle spotlessApply and doc tweaks

3 months agoJAL-3631 Adjustment to wizard size (was too big in Windows) and add 'Administrator...
Ben Soares [Mon, 5 Aug 2024 14:40:17 +0000 (15:40 +0100)]
JAL-3631 Adjustment to wizard size (was too big in Windows) and add 'Administrator mode' label to installation progress screen

3 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Mon, 5 Aug 2024 11:48:39 +0000 (12:48 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

3 months agoJAL-3631 made Readlink-f work in powershell. Need to test once more in Windows\!
Ben Soares [Fri, 2 Aug 2024 16:49:18 +0000 (17:49 +0100)]
JAL-3631 made Readlink-f work in powershell.  Need to test once more in Windows\!

3 months agoJAL-4418 release note for JAL-3063 doc/jalview-projects.md
Jim Procter [Fri, 2 Aug 2024 15:47:31 +0000 (16:47 +0100)]
JAL-4418 release note for JAL-3063 doc/jalview-projects.md

3 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Fri, 2 Aug 2024 15:41:03 +0000 (16:41 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

3 months agoJAL-3631 update.sh script fixed to work in Windows (11)
Ben Soares [Fri, 2 Aug 2024 15:06:22 +0000 (16:06 +0100)]
JAL-3631 update.sh script fixed to work in Windows (11)

3 months agoJAL-3631 Administrator mode label on all screens of wizard
Ben Soares [Thu, 1 Aug 2024 19:57:51 +0000 (20:57 +0100)]
JAL-3631 Administrator mode label on all screens of wizard

3 months agoJAL-3631 Added a test for a specified update and a usage line. update.ps1 tested...
Ben Soares [Thu, 1 Aug 2024 16:24:00 +0000 (17:24 +0100)]
JAL-3631 Added a test for a specified update and a usage line. update.ps1 tested on macos

3 months agoMerge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_di...
Ben Soares [Thu, 1 Aug 2024 15:34:01 +0000 (16:34 +0100)]
Merge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_directory

3 months agoJAL-3631 Small change to update.sh. update.ps1 NOT COMPLETED YET
Ben Soares [Thu, 1 Aug 2024 15:33:39 +0000 (16:33 +0100)]
JAL-3631 Small change to update.sh. update.ps1 NOT COMPLETED YET

3 months agoJAL-3631 Remove a debug echo
Ben Soares [Thu, 1 Aug 2024 15:15:11 +0000 (16:15 +0100)]
JAL-3631 Remove a debug echo

3 months agoJAL-4445 - increase the fileglob expected counts
Jim Procter [Thu, 1 Aug 2024 15:14:15 +0000 (16:14 +0100)]
JAL-4445 - increase the fileglob expected counts

3 months agoJAL-3631 Convert both CLASSPATHS in update.sh
Ben Soares [Thu, 1 Aug 2024 14:40:56 +0000 (15:40 +0100)]
JAL-3631 Convert both CLASSPATHS in update.sh

3 months agoJAL-3631 Separated jalview.sh and update.sh, and included in install4j installer...
Ben Soares [Thu, 1 Aug 2024 14:30:15 +0000 (15:30 +0100)]
JAL-3631 Separated jalview.sh and update.sh, and included in install4j installer and macos DMG.

3 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Thu, 1 Aug 2024 13:57:32 +0000 (14:57 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

3 months agoJAL-3631 Changes to bash launcher to allow headless updates to user-space or installa...
Ben Soares [Wed, 31 Jul 2024 15:38:42 +0000 (16:38 +0100)]
JAL-3631 Changes to bash launcher to allow headless updates to user-space or installation. Added some of this functionality to Powershell (work in progress).  The update functionality is to be separated out to update.sh.

3 months agoJAL-3631 Add a (by-passable) confirmation and improved output to the macos-install...
Ben Soares [Wed, 31 Jul 2024 15:37:17 +0000 (16:37 +0100)]
JAL-3631 Add a (by-passable) confirmation and improved output to the macos-install-jalview.sh script, with some corrections

3 months agoJAL-3631 Changes to Getdown to call getdown-launcher.jar update without launching...
Ben Soares [Wed, 31 Jul 2024 15:36:01 +0000 (16:36 +0100)]
JAL-3631 Changes to Getdown to call getdown-launcher.jar update without launching Jalview for both installation and user-space

3 months agoJAL-3631 Correction to a comment in build.gradle
Ben Soares [Wed, 31 Jul 2024 15:33:03 +0000 (16:33 +0100)]
JAL-3631 Correction to a comment in build.gradle

3 months agoJAL-3631 Add --updateuser and --updateinstallation to the jalview.sh script: This...
Ben Soares [Mon, 29 Jul 2024 18:44:49 +0000 (19:44 +0100)]
JAL-3631 Add --updateuser and --updateinstallation to the jalview.sh script: This runs getdown in headless mode to run update of either user or installation appdir without launching Jalview

3 months agoJAL-3631 Small corrections
Ben Soares [Mon, 29 Jul 2024 18:43:25 +0000 (19:43 +0100)]
JAL-3631 Small corrections

3 months agoJAL-3631 Getdown acknowledges in output when only performing an update
Ben Soares [Mon, 29 Jul 2024 18:42:47 +0000 (19:42 +0100)]
JAL-3631 Getdown acknowledges in output when only performing an update

3 months agoJAL-3631 Ensure the DMG default vmoptions.txt has the commented properties
Ben Soares [Mon, 29 Jul 2024 18:06:45 +0000 (19:06 +0100)]
JAL-3631 Ensure the DMG default vmoptions.txt has the commented properties

3 months agoJAL-3631 Add PID to console info - only available in Java 9+
Ben Soares [Mon, 29 Jul 2024 18:04:49 +0000 (19:04 +0100)]
JAL-3631 Add PID to console info - only available in Java 9+

3 months agoJAL-4443 patch out pasimap in GUI for JalviewJS and note some lines causing java2scri...
Jim Procter [Mon, 29 Jul 2024 16:35:38 +0000 (17:35 +0100)]
JAL-4443 patch out pasimap in GUI for JalviewJS and note some lines causing java2script issues

3 months agoJAL-3631 Added an --update option to the jalview.sh launcher (does not launch, just...
Ben Soares [Fri, 26 Jul 2024 16:50:10 +0000 (17:50 +0100)]
JAL-3631 Added an --update option to the jalview.sh launcher (does not launch, just updates).  Combining the update script with this as there's a lot of work to make this shell script Linux/macOS/Cygwin/WSL compliant that doesn't need to be duplicated.  PS1 still to do.

3 months agoJAL-4418 updated release notes and release date to 13 august 2024
Jim Procter [Fri, 26 Jul 2024 16:02:24 +0000 (17:02 +0100)]
JAL-4418 updated release notes and release date to 13 august 2024

3 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Fri, 26 Jul 2024 15:25:34 +0000 (16:25 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

3 months agoMerge branch 'patch/JAL-4428_osx_codesigning_scripts' into develop
Jim Procter [Fri, 26 Jul 2024 15:23:06 +0000 (16:23 +0100)]
Merge branch 'patch/JAL-4428_osx_codesigning_scripts' into develop

3 months agoJAL-3631 Added verbose and quiet options, and matched vmoptions with installer. Prove...
Ben Soares [Fri, 26 Jul 2024 14:39:41 +0000 (15:39 +0100)]
JAL-3631 Added verbose and quiet options, and matched vmoptions with installer. Provenance of options added.

3 months agoJAL-3631 Some minor bugfixes to the install4j installer and word changes to match...
Ben Soares [Fri, 26 Jul 2024 14:38:28 +0000 (15:38 +0100)]
JAL-3631 Some minor bugfixes to the install4j installer and word changes to match macos-install-jalview.sh

3 months agoJAL-3631 Comprehensive install shell script for macos
Ben Soares [Thu, 25 Jul 2024 16:35:57 +0000 (17:35 +0100)]
JAL-3631 Comprehensive install shell script for macos

3 months agoJAL-3631 minor changes - spelling and comment spacing in install4j template
Ben Soares [Thu, 25 Jul 2024 16:35:37 +0000 (17:35 +0100)]
JAL-3631 minor changes - spelling and comment spacing in install4j template

3 months agoJAL-3063 added a brief description of how to update the jalview project POJO
Jim Procter [Wed, 24 Jul 2024 14:27:28 +0000 (15:27 +0100)]
JAL-3063 added a brief description of how to update the jalview project POJO

3 months agoJAL-3631 Correct some text to add the file separator which is being looked for too...
Ben Soares [Wed, 24 Jul 2024 13:17:47 +0000 (14:17 +0100)]
JAL-3631 Correct some text to add the file separator which is being looked for too in substitutions

3 months agoJAL-3631 Consolidated repeated code (mainly form verification). Added appdir hash...
Ben Soares [Tue, 23 Jul 2024 16:03:43 +0000 (17:03 +0100)]
JAL-3631 Consolidated repeated code (mainly form verification). Added appdir hash routine. Wizard installer of .app bundle now deprecated, can't be used :(

3 months agoJAL-3631 Minor fixes to the advanced options scripts
Ben Soares [Mon, 22 Jul 2024 19:36:33 +0000 (20:36 +0100)]
JAL-3631 Minor fixes to the advanced options scripts

3 months agoJAL-3631 Made both Advanced options into a group. Changed visibility scripts to...
Ben Soares [Mon, 22 Jul 2024 17:08:36 +0000 (18:08 +0100)]
JAL-3631 Made both Advanced options into a group.  Changed visibility scripts to minimum required.  Added a Don't setUserAppdirPath comment.

3 months agoJAL-3631 Improved tooltip on advanced options. Ensure empty box/border isn't displaye...
Ben Soares [Sun, 21 Jul 2024 19:32:59 +0000 (20:32 +0100)]
JAL-3631 Improved tooltip on advanced options. Ensure empty box/border isn't displayed when no advanced options. Add message to clarify no Advanced options will be applied when checkbox not ticked.

3 months agoJAL-3631 Group/box and simplify visibility of advanced options on additional tasks...
Ben Soares [Sat, 20 Jul 2024 16:55:37 +0000 (17:55 +0100)]
JAL-3631 Group/box and simplify visibility of advanced options on additional tasks screen in the install4j installation wizard.

3 months agoJAL-3631 Consistently and correctly enable/diable/hide elements on the additional...
Ben Soares [Sat, 20 Jul 2024 08:52:28 +0000 (09:52 +0100)]
JAL-3631 Consistently and correctly enable/diable/hide elements on the additional tasks screen in the install4j installation wizard.

3 months agoJAL-3631 Customise the user-space path in the install4j installation wizard. Not...
Ben Soares [Fri, 19 Jul 2024 17:47:35 +0000 (18:47 +0100)]
JAL-3631 Customise the user-space path in the install4j installation wizard.  Not ready yet.

3 months agoJAL-3631 Tweaks to getdown for updating and user appdir properties
Ben Soares [Thu, 18 Jul 2024 16:21:58 +0000 (17:21 +0100)]
JAL-3631 Tweaks to getdown for updating and user appdir properties

3 months agoJAL-3631 Allow override of appDataPath with property 'setuserappdirpath' substituting...
Ben Soares [Thu, 18 Jul 2024 11:05:34 +0000 (12:05 +0100)]
JAL-3631 Allow override of appDataPath with property 'setuserappdirpath' substituting %h, %u and a leading ~/

3 months agoJAL-3631 Extensive working of options in install4j for allowing/disabling user defaul...
Ben Soares [Wed, 17 Jul 2024 15:31:01 +0000 (16:31 +0100)]
JAL-3631 Extensive working of options in install4j for allowing/disabling user default appdir updates, and also allowing/disabling installation appdir updates. Appropriate guidance in tooltips and warnings when no updates will occur are given.  A user-space install only allows disabling updates.

3 months agoshorter hashes - just first seven characters.. like in git
Jim Procter [Fri, 12 Jul 2024 16:58:43 +0000 (17:58 +0100)]
shorter hashes - just first seven characters.. like in git

3 months agoJAL-3631 updated getdown jars
Jim Procter [Fri, 12 Jul 2024 16:41:38 +0000 (17:41 +0100)]
JAL-3631 updated getdown jars

3 months agoJAL-3631 - report that an additional flag might be needed if we didn't manage to...
Jim Procter [Fri, 12 Jul 2024 16:40:46 +0000 (17:40 +0100)]
JAL-3631 - report that an additional flag might be needed if we didn't manage to get an appDir

3 months agoJAL-3631 shorter digest string for the unique user app dir
Jim Procter [Fri, 12 Jul 2024 16:38:59 +0000 (17:38 +0100)]
JAL-3631 shorter digest string for the unique user app dir

3 months agoJAL-3631 check we actually created EnvConfig!
Jim Procter [Fri, 12 Jul 2024 16:38:26 +0000 (17:38 +0100)]
JAL-3631 check we actually created EnvConfig!

3 months agoJAL-3631 updated getdown jars
Jim Procter [Fri, 12 Jul 2024 14:24:47 +0000 (15:24 +0100)]
JAL-3631 updated getdown jars

3 months agoJAL-3631 insert digest of full path to installer.appdir in path for user appdir and...
Jim Procter [Fri, 12 Jul 2024 13:17:35 +0000 (14:17 +0100)]
JAL-3631 insert digest of full path to installer.appdir in path for user appdir and add tests to verify nouserdefaultappdir clobbers userdefaultappdir

4 months agoJAL-3631 rebuild getdown jars after merge to develop
Jim Procter [Wed, 3 Jul 2024 19:56:00 +0000 (20:56 +0100)]
JAL-3631 rebuild getdown jars after merge to develop

4 months agoMerge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into...
Jim Procter [Wed, 3 Jul 2024 19:16:18 +0000 (20:16 +0100)]
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop

4 months agoJAL-3631 Slightly larger wizard
Ben Soares [Mon, 1 Jul 2024 01:05:40 +0000 (02:05 +0100)]
JAL-3631 Slightly larger wizard

4 months agoJAL-3631 Harden defence against looping getdown relaunches. Null checked in HttpUtils...
Ben Soares [Mon, 1 Jul 2024 01:05:00 +0000 (02:05 +0100)]
JAL-3631 Harden defence against looping getdown relaunches. Null checked in HttpUtils. Remove unnecessary code in getdown

4 months agoJAL-3631 JVL file with appbase now relaunches getdown
Ben Soares [Sat, 29 Jun 2024 21:53:27 +0000 (22:53 +0100)]
JAL-3631 JVL file with appbase now relaunches getdown

4 months agoJAL-3631 Made an isAdmin flag to work in Windows Admin mode installation
Ben Soares [Fri, 28 Jun 2024 17:18:51 +0000 (18:18 +0100)]
JAL-3631 Made an isAdmin flag to work in Windows Admin mode installation

4 months agoJAL-3830 Added some quotation marks to jalview.bat for folders with spaces
Ben Soares [Fri, 28 Jun 2024 17:18:12 +0000 (18:18 +0100)]
JAL-3830 Added some quotation marks to jalview.bat for folders with spaces

4 months agoJAL-3631 Remove the checkboxes from the Finish screen. Now moved to pre-install screen.
Ben Soares [Fri, 28 Jun 2024 16:04:09 +0000 (17:04 +0100)]
JAL-3631 Remove the checkboxes from the Finish screen. Now moved to pre-install screen.

4 months agoJAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and other groups of tasks) together...
Ben Soares [Fri, 28 Jun 2024 15:53:52 +0000 (16:53 +0100)]
JAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and other groups of tasks) together for neatness

4 months agoJAL-3631 Change in user path for locally installed Jalview to avoid collision with...
Ben Soares [Fri, 28 Jun 2024 15:53:16 +0000 (16:53 +0100)]
JAL-3631 Change in user path for locally installed Jalview to avoid collision with old installation. Tidy a null check for Java Console output

4 months agoJAL-3631 Change to Windows user-space default location, now same as default installat...
Ben Soares [Fri, 28 Jun 2024 11:30:01 +0000 (12:30 +0100)]
JAL-3631 Change to Windows user-space default location, now same as default installation location

4 months agoJAL-3631 Fixed a getdown Exception when launching Jalview in windows
Ben Soares [Fri, 28 Jun 2024 11:04:50 +0000 (12:04 +0100)]
JAL-3631 Fixed a getdown Exception when launching Jalview in windows

4 months agoJAL-3631 Adjustments to the Windows installer
Ben Soares [Fri, 28 Jun 2024 11:04:05 +0000 (12:04 +0100)]
JAL-3631 Adjustments to the Windows installer

4 months agoJAL-3631 spelling correction
Ben Soares [Thu, 27 Jun 2024 23:37:42 +0000 (00:37 +0100)]
JAL-3631 spelling correction

4 months agoJAL-3631 Installers with separate actions for user/administrator installation
Ben Soares [Thu, 27 Jun 2024 21:15:41 +0000 (22:15 +0100)]
JAL-3631 Installers with separate actions for user/administrator installation

4 months agoJAL-3631 Add property to let log4j know we're not running in a servlet (or it issues...
Ben Soares [Thu, 27 Jun 2024 21:14:58 +0000 (22:14 +0100)]
JAL-3631 Add property to let log4j know we're not running in a servlet (or it issues a warning which breaks cli headless output)

4 months agoJAL-3631 Log4j logging to .jalview.log file when requested. Clean(ish) handover of...
Ben Soares [Thu, 27 Jun 2024 16:46:47 +0000 (17:46 +0100)]
JAL-3631 Log4j logging to .jalview.log file when requested. Clean(ish) handover of log file from getdown to jalview.

4 months agoJAL-3631 JAL-3384 Install4j launch now redirects STDOUT/STDERR to ~/.jalview_develop...
Ben Soares [Tue, 25 Jun 2024 22:13:55 +0000 (23:13 +0100)]
JAL-3631 JAL-3384 Install4j launch now redirects STDOUT/STDERR to ~/.jalview_develop.log and passes the file on to getdown and Jalview which will also now log to this file.  Single log file.

4 months agoJAL-3631 Use the icon file passed by install4j if a newer getdown-launcher is relaunched
Ben Soares [Tue, 25 Jun 2024 10:31:17 +0000 (11:31 +0100)]
JAL-3631 Use the icon file passed by install4j if a newer getdown-launcher is relaunched