amwaterhouse [Tue, 8 Nov 2005 11:39:39 +0000 (11:39 +0000)]
jalview mapping
amwaterhouse [Tue, 8 Nov 2005 11:39:18 +0000 (11:39 +0000)]
Preliminary storeJalview
amwaterhouse [Tue, 8 Nov 2005 11:37:27 +0000 (11:37 +0000)]
getVersion added for Castor mapping
amwaterhouse [Fri, 4 Nov 2005 10:56:54 +0000 (10:56 +0000)]
Id parsing moved to Sequence
amwaterhouse [Fri, 4 Nov 2005 10:56:23 +0000 (10:56 +0000)]
REmove system.out
amwaterhouse [Fri, 4 Nov 2005 10:55:55 +0000 (10:55 +0000)]
Show full id
amwaterhouse [Fri, 4 Nov 2005 10:55:28 +0000 (10:55 +0000)]
Display full id in trees
amwaterhouse [Fri, 4 Nov 2005 10:54:58 +0000 (10:54 +0000)]
Use visible id for sorting
amwaterhouse [Wed, 2 Nov 2005 18:08:14 +0000 (18:08 +0000)]
Load and save Feature Colour Settings
amwaterhouse [Wed, 2 Nov 2005 16:56:37 +0000 (16:56 +0000)]
Java 1.5 bug note
amwaterhouse [Wed, 2 Nov 2005 16:07:05 +0000 (16:07 +0000)]
Allow residue prefix to dataset
amwaterhouse [Wed, 2 Nov 2005 16:06:39 +0000 (16:06 +0000)]
Only add first Id to suggestedIds
amwaterhouse [Wed, 2 Nov 2005 16:06:05 +0000 (16:06 +0000)]
Add jvsuffix and dbref to menu
amwaterhouse [Wed, 2 Nov 2005 16:05:44 +0000 (16:05 +0000)]
2CdbPrefix true by default
amwaterhouse [Wed, 2 Nov 2005 16:05:11 +0000 (16:05 +0000)]
Output jvsuffix, dbref
amwaterhouse [Tue, 1 Nov 2005 17:09:15 +0000 (17:09 +0000)]
Inform user about visual alignment, not dataset updates
amwaterhouse [Tue, 1 Nov 2005 17:08:36 +0000 (17:08 +0000)]
Wrap long description in table
jprocter [Tue, 1 Nov 2005 16:02:04 +0000 (16:02 +0000)]
dataset reference propagated to new MsaWS alignment.
jprocter [Tue, 1 Nov 2005 16:01:03 +0000 (16:01 +0000)]
stores reference to dataset sequence if present
amwaterhouse [Tue, 1 Nov 2005 15:35:39 +0000 (15:35 +0000)]
Label changes
amwaterhouse [Tue, 1 Nov 2005 15:35:22 +0000 (15:35 +0000)]
Show JVSuffix
amwaterhouse [Tue, 1 Nov 2005 15:34:35 +0000 (15:34 +0000)]
disulfide bond exceptions
jprocter [Tue, 1 Nov 2005 15:21:20 +0000 (15:21 +0000)]
trivial change ("" to new String() in static method)
amwaterhouse [Tue, 1 Nov 2005 11:35:19 +0000 (11:35 +0000)]
New schema, new objects
amwaterhouse [Tue, 1 Nov 2005 11:32:35 +0000 (11:32 +0000)]
Adjust seq limits for visual and dataset sequences
amwaterhouse [Mon, 31 Oct 2005 15:57:24 +0000 (15:57 +0000)]
dbPrefix and jvsuffix added
amwaterhouse [Mon, 31 Oct 2005 15:56:43 +0000 (15:56 +0000)]
getDisplayId changed
amwaterhouse [Mon, 31 Oct 2005 15:56:21 +0000 (15:56 +0000)]
jalviewClipboard added
amwaterhouse [Mon, 31 Oct 2005 15:56:03 +0000 (15:56 +0000)]
Display only selected features
amwaterhouse [Mon, 31 Oct 2005 15:55:28 +0000 (15:55 +0000)]
DBPrefix and JVSuffix added
amwaterhouse [Mon, 31 Oct 2005 15:55:03 +0000 (15:55 +0000)]
FeatureRenderer doenst use groups
amwaterhouse [Mon, 31 Oct 2005 15:54:29 +0000 (15:54 +0000)]
Sequence.getDatasetSequence().getFeatures
amwaterhouse [Mon, 31 Oct 2005 15:54:00 +0000 (15:54 +0000)]
Use fontmetrics to tidy up display
amwaterhouse [Mon, 31 Oct 2005 15:53:31 +0000 (15:53 +0000)]
Prompt before blasting
amwaterhouse [Mon, 31 Oct 2005 15:53:08 +0000 (15:53 +0000)]
equalsIgnoreCase CLUSTAL
amwaterhouse [Mon, 31 Oct 2005 15:52:49 +0000 (15:52 +0000)]
Catch numberformatexceptions
amwaterhouse [Mon, 31 Oct 2005 15:52:23 +0000 (15:52 +0000)]
Accession and name unbounded
amwaterhouse [Mon, 31 Oct 2005 15:52:04 +0000 (15:52 +0000)]
DisplayId can be dbref and or jvsuffix
amwaterhouse [Mon, 31 Oct 2005 15:51:11 +0000 (15:51 +0000)]
Find by displayid not used
amwaterhouse [Mon, 31 Oct 2005 15:48:42 +0000 (15:48 +0000)]
name and accession are unbounded
jprocter [Thu, 27 Oct 2005 17:04:27 +0000 (17:04 +0000)]
fixed exception thrown when msa web service is applied to alignment with sequence features.
amwaterhouse [Thu, 27 Oct 2005 14:43:40 +0000 (14:43 +0000)]
Castor generated
amwaterhouse [Thu, 27 Oct 2005 11:19:46 +0000 (11:19 +0000)]
Disable featuresettings
amwaterhouse [Thu, 27 Oct 2005 11:19:27 +0000 (11:19 +0000)]
Moved vector features
amwaterhouse [Thu, 27 Oct 2005 11:19:10 +0000 (11:19 +0000)]
Allow old style groups file
amwaterhouse [Thu, 27 Oct 2005 11:13:58 +0000 (11:13 +0000)]
Remove system.out
amwaterhouse [Thu, 27 Oct 2005 11:13:42 +0000 (11:13 +0000)]
Remove static refs to applet
amwaterhouse [Thu, 27 Oct 2005 11:12:06 +0000 (11:12 +0000)]
MyGraphics added to enhance applet GUI
amwaterhouse [Wed, 26 Oct 2005 16:23:18 +0000 (16:23 +0000)]
Groups file is now feature file
amwaterhouse [Wed, 26 Oct 2005 16:22:50 +0000 (16:22 +0000)]
Parsing updates
amwaterhouse [Wed, 26 Oct 2005 14:31:45 +0000 (14:31 +0000)]
vamsasDemo new branch
amwaterhouse [Wed, 26 Oct 2005 14:22:55 +0000 (14:22 +0000)]
Used for sequence feature mapping
amwaterhouse [Fri, 7 Oct 2005 10:24:56 +0000 (10:24 +0000)]
comma separated rgb values
amwaterhouse [Fri, 7 Oct 2005 10:24:23 +0000 (10:24 +0000)]
getalignment method added
amwaterhouse [Fri, 7 Oct 2005 10:23:28 +0000 (10:23 +0000)]
Quick fix for reading sequence
amwaterhouse [Fri, 7 Oct 2005 10:22:57 +0000 (10:22 +0000)]
Select all cutandpaste
amwaterhouse [Fri, 7 Oct 2005 10:20:49 +0000 (10:20 +0000)]
Don't exit if file not found and not headless
amwaterhouse [Wed, 5 Oct 2005 12:34:32 +0000 (12:34 +0000)]
Sequence start end added for the time being
amwaterhouse [Mon, 3 Oct 2005 16:14:54 +0000 (16:14 +0000)]
Remove float width
amwaterhouse [Mon, 3 Oct 2005 11:08:22 +0000 (11:08 +0000)]
Request focus for new frames
amwaterhouse [Mon, 3 Oct 2005 11:07:55 +0000 (11:07 +0000)]
Return if no searchString
amwaterhouse [Mon, 3 Oct 2005 11:07:40 +0000 (11:07 +0000)]
Keylistener added to internalFrame
amwaterhouse [Mon, 3 Oct 2005 10:30:04 +0000 (10:30 +0000)]
Remove development code
amwaterhouse [Mon, 3 Oct 2005 08:33:08 +0000 (08:33 +0000)]
Remove redundancy from eclipse
amwaterhouse [Fri, 30 Sep 2005 17:18:41 +0000 (17:18 +0000)]
Remove redundancy from Eclipse
amwaterhouse [Fri, 30 Sep 2005 17:18:22 +0000 (17:18 +0000)]
Restore file before eclipse changes
amwaterhouse [Fri, 30 Sep 2005 17:03:03 +0000 (17:03 +0000)]
Remove redundancy in Eclipse
amwaterhouse [Thu, 29 Sep 2005 16:11:50 +0000 (16:11 +0000)]
Take into account scroll value
amwaterhouse [Wed, 28 Sep 2005 16:54:08 +0000 (16:54 +0000)]
use lower case home.png
amwaterhouse [Wed, 28 Sep 2005 16:53:46 +0000 (16:53 +0000)]
Applet frame name
amwaterhouse [Wed, 28 Sep 2005 16:13:09 +0000 (16:13 +0000)]
Set frame size each applet
amwaterhouse [Wed, 28 Sep 2005 15:42:18 +0000 (15:42 +0000)]
Remove latestVersion if null
amwaterhouse [Wed, 28 Sep 2005 15:39:51 +0000 (15:39 +0000)]
Remove latestVersion if null
amwaterhouse [Wed, 28 Sep 2005 15:08:50 +0000 (15:08 +0000)]
2.06
amwaterhouse [Wed, 28 Sep 2005 15:07:04 +0000 (15:07 +0000)]
Put clip back in
amwaterhouse [Wed, 28 Sep 2005 14:55:06 +0000 (14:55 +0000)]
Change font
amwaterhouse [Wed, 28 Sep 2005 14:54:23 +0000 (14:54 +0000)]
More features for PCA
amwaterhouse [Wed, 28 Sep 2005 14:54:03 +0000 (14:54 +0000)]
Wrap alignment with annotations
amwaterhouse [Wed, 28 Sep 2005 14:53:45 +0000 (14:53 +0000)]
New params
amwaterhouse [Tue, 27 Sep 2005 14:16:59 +0000 (14:16 +0000)]
Show labels in wrapped view
amwaterhouse [Fri, 23 Sep 2005 16:18:02 +0000 (16:18 +0000)]
Draw labels, anti alias
amwaterhouse [Fri, 23 Sep 2005 16:17:33 +0000 (16:17 +0000)]
Capture output as details
amwaterhouse [Fri, 23 Sep 2005 16:17:12 +0000 (16:17 +0000)]
Right click copy/paste popup
amwaterhouse [Fri, 23 Sep 2005 16:16:53 +0000 (16:16 +0000)]
Now an InternalFrame with menus
amwaterhouse [Thu, 22 Sep 2005 16:04:51 +0000 (16:04 +0000)]
SetAnnotationVisible - ignore if wrapped
amwaterhouse [Thu, 22 Sep 2005 15:53:18 +0000 (15:53 +0000)]
Create Instance of FormatAdapter
amwaterhouse [Thu, 22 Sep 2005 15:52:52 +0000 (15:52 +0000)]
Dont calculate conservation for nucleotides
amwaterhouse [Thu, 22 Sep 2005 15:50:47 +0000 (15:50 +0000)]
isNucleotide
amwaterhouse [Thu, 22 Sep 2005 15:49:51 +0000 (15:49 +0000)]
Create instance of FormatAdapter
amwaterhouse [Thu, 22 Sep 2005 15:49:21 +0000 (15:49 +0000)]
Add nucleotide names
amwaterhouse [Thu, 22 Sep 2005 15:49:05 +0000 (15:49 +0000)]
Display nucleotides
amwaterhouse [Thu, 22 Sep 2005 15:48:39 +0000 (15:48 +0000)]
Break if regex not found
amwaterhouse [Thu, 22 Sep 2005 13:23:38 +0000 (13:23 +0000)]
If Mac user hasnt selected file format, give warning
amwaterhouse [Thu, 22 Sep 2005 13:23:07 +0000 (13:23 +0000)]
Wrap alignment with annotations
amwaterhouse [Thu, 22 Sep 2005 13:21:51 +0000 (13:21 +0000)]
Check if filefilter is null
amwaterhouse [Wed, 21 Sep 2005 17:09:14 +0000 (17:09 +0000)]
Jalview
amwaterhouse [Wed, 21 Sep 2005 17:08:56 +0000 (17:08 +0000)]
Sequences must be aligned before PCA
amwaterhouse [Wed, 21 Sep 2005 17:07:57 +0000 (17:07 +0000)]
Next active Frame losing focus bug fixed
amwaterhouse [Tue, 20 Sep 2005 14:17:32 +0000 (14:17 +0000)]
Use gtk icons
amwaterhouse [Tue, 20 Sep 2005 14:17:15 +0000 (14:17 +0000)]
GTK icons
git://source.jalview.org / jalview.git / log