amwaterhouse [Wed, 28 Sep 2005 15:08:50 +0000 (15:08 +0000)]
2.06
amwaterhouse [Wed, 28 Sep 2005 15:07:04 +0000 (15:07 +0000)]
Put clip back in
amwaterhouse [Wed, 28 Sep 2005 14:55:06 +0000 (14:55 +0000)]
Change font
amwaterhouse [Wed, 28 Sep 2005 14:54:23 +0000 (14:54 +0000)]
More features for PCA
amwaterhouse [Wed, 28 Sep 2005 14:54:03 +0000 (14:54 +0000)]
Wrap alignment with annotations
amwaterhouse [Wed, 28 Sep 2005 14:53:45 +0000 (14:53 +0000)]
New params
amwaterhouse [Tue, 27 Sep 2005 14:16:59 +0000 (14:16 +0000)]
Show labels in wrapped view
amwaterhouse [Fri, 23 Sep 2005 16:18:02 +0000 (16:18 +0000)]
Draw labels, anti alias
amwaterhouse [Fri, 23 Sep 2005 16:17:33 +0000 (16:17 +0000)]
Capture output as details
amwaterhouse [Fri, 23 Sep 2005 16:17:12 +0000 (16:17 +0000)]
Right click copy/paste popup
amwaterhouse [Fri, 23 Sep 2005 16:16:53 +0000 (16:16 +0000)]
Now an InternalFrame with menus
amwaterhouse [Thu, 22 Sep 2005 16:04:51 +0000 (16:04 +0000)]
SetAnnotationVisible - ignore if wrapped
amwaterhouse [Thu, 22 Sep 2005 15:53:18 +0000 (15:53 +0000)]
Create Instance of FormatAdapter
amwaterhouse [Thu, 22 Sep 2005 15:52:52 +0000 (15:52 +0000)]
Dont calculate conservation for nucleotides
amwaterhouse [Thu, 22 Sep 2005 15:50:47 +0000 (15:50 +0000)]
isNucleotide
amwaterhouse [Thu, 22 Sep 2005 15:49:51 +0000 (15:49 +0000)]
Create instance of FormatAdapter
amwaterhouse [Thu, 22 Sep 2005 15:49:21 +0000 (15:49 +0000)]
Add nucleotide names
amwaterhouse [Thu, 22 Sep 2005 15:49:05 +0000 (15:49 +0000)]
Display nucleotides
amwaterhouse [Thu, 22 Sep 2005 15:48:39 +0000 (15:48 +0000)]
Break if regex not found
amwaterhouse [Thu, 22 Sep 2005 13:23:38 +0000 (13:23 +0000)]
If Mac user hasnt selected file format, give warning
amwaterhouse [Thu, 22 Sep 2005 13:23:07 +0000 (13:23 +0000)]
Wrap alignment with annotations
amwaterhouse [Thu, 22 Sep 2005 13:21:51 +0000 (13:21 +0000)]
Check if filefilter is null
amwaterhouse [Wed, 21 Sep 2005 17:09:14 +0000 (17:09 +0000)]
Jalview
amwaterhouse [Wed, 21 Sep 2005 17:08:56 +0000 (17:08 +0000)]
Sequences must be aligned before PCA
amwaterhouse [Wed, 21 Sep 2005 17:07:57 +0000 (17:07 +0000)]
Next active Frame losing focus bug fixed
amwaterhouse [Tue, 20 Sep 2005 14:17:32 +0000 (14:17 +0000)]
Use gtk icons
amwaterhouse [Tue, 20 Sep 2005 14:17:15 +0000 (14:17 +0000)]
GTK icons
amwaterhouse [Tue, 20 Sep 2005 14:17:01 +0000 (14:17 +0000)]
Add carriage return after memory settings
amwaterhouse [Tue, 20 Sep 2005 13:21:39 +0000 (13:21 +0000)]
Checks end of sequence before drawing text
amwaterhouse [Tue, 20 Sep 2005 13:21:13 +0000 (13:21 +0000)]
Format label left align
amwaterhouse [Tue, 20 Sep 2005 13:20:53 +0000 (13:20 +0000)]
Optimise copy image
amwaterhouse [Tue, 20 Sep 2005 13:20:37 +0000 (13:20 +0000)]
PCAPanel checks viewport selection group
amwaterhouse [Tue, 20 Sep 2005 13:19:33 +0000 (13:19 +0000)]
PCAPanel checks viewport selection
amwaterhouse [Tue, 20 Sep 2005 13:19:07 +0000 (13:19 +0000)]
PCAPanel just requires viewport
amwaterhouse [Tue, 20 Sep 2005 13:17:05 +0000 (13:17 +0000)]
Help gets bounds from help map file
amwaterhouse [Tue, 20 Sep 2005 13:16:09 +0000 (13:16 +0000)]
New methods in treePanel
amwaterhouse [Tue, 20 Sep 2005 13:15:31 +0000 (13:15 +0000)]
Null pointer if user presses shift before anything else
amwaterhouse [Tue, 20 Sep 2005 13:14:09 +0000 (13:14 +0000)]
Align labels format left
amwaterhouse [Tue, 20 Sep 2005 13:13:49 +0000 (13:13 +0000)]
Optimise graphics copy object
amwaterhouse [Tue, 20 Sep 2005 13:13:32 +0000 (13:13 +0000)]
Use selectionGroup to find chosen sequences
amwaterhouse [Tue, 20 Sep 2005 13:13:07 +0000 (13:13 +0000)]
Make sure fontmetrics is not null
amwaterhouse [Mon, 19 Sep 2005 13:41:25 +0000 (13:41 +0000)]
Make sure fontmetrics exists for headless state
amwaterhouse [Mon, 19 Sep 2005 13:40:55 +0000 (13:40 +0000)]
Dont add ServiceListeners if desktop is null
amwaterhouse [Mon, 19 Sep 2005 12:49:39 +0000 (12:49 +0000)]
Alignment of node labels modified
amwaterhouse [Mon, 19 Sep 2005 12:49:14 +0000 (12:49 +0000)]
ShowDistances, placeHolders and bootstraps have their own methods
amwaterhouse [Fri, 16 Sep 2005 14:34:57 +0000 (14:34 +0000)]
Check image is not null in fast paint
amwaterhouse [Fri, 16 Sep 2005 14:34:26 +0000 (14:34 +0000)]
Set distanceMenu selected true
amwaterhouse [Thu, 15 Sep 2005 14:09:08 +0000 (14:09 +0000)]
Memory settings added to help
amwaterhouse [Thu, 15 Sep 2005 11:19:55 +0000 (11:19 +0000)]
Correct date
jprocter [Thu, 15 Sep 2005 11:16:12 +0000 (11:16 +0000)]
Fixed so job submission and job failure errors are reported to user and server exceptions also generate error and log messages.
amwaterhouse [Thu, 15 Sep 2005 10:53:35 +0000 (10:53 +0000)]
Copy uses fasta format
amwaterhouse [Thu, 15 Sep 2005 10:53:12 +0000 (10:53 +0000)]
2.05b
amwaterhouse [Thu, 15 Sep 2005 10:28:30 +0000 (10:28 +0000)]
Add Uracil as X unknown
amwaterhouse [Thu, 15 Sep 2005 10:08:32 +0000 (10:08 +0000)]
OptionPane warning for out of memory
amwaterhouse [Thu, 15 Sep 2005 10:08:15 +0000 (10:08 +0000)]
remove system.out
amwaterhouse [Thu, 15 Sep 2005 10:07:56 +0000 (10:07 +0000)]
Remove key listener
amwaterhouse [Thu, 15 Sep 2005 09:39:30 +0000 (09:39 +0000)]
Dont add time to build date
amwaterhouse [Thu, 15 Sep 2005 09:11:58 +0000 (09:11 +0000)]
Add main-class to jar files
amwaterhouse [Thu, 15 Sep 2005 09:09:35 +0000 (09:09 +0000)]
Use equalsIgnoreCase
amwaterhouse [Thu, 15 Sep 2005 09:09:17 +0000 (09:09 +0000)]
Applet has main method, excutable
amwaterhouse [Thu, 15 Sep 2005 09:08:21 +0000 (09:08 +0000)]
Logger moved to prefs so that class not found error can be handled in main
amwaterhouse [Wed, 14 Sep 2005 16:14:02 +0000 (16:14 +0000)]
Preferences updated
amwaterhouse [Wed, 14 Sep 2005 15:44:27 +0000 (15:44 +0000)]
Move bootStrap/distance settings outside thread
amwaterhouse [Wed, 14 Sep 2005 15:43:55 +0000 (15:43 +0000)]
Add end of consensus test for wrapped edit
amwaterhouse [Wed, 14 Sep 2005 15:43:23 +0000 (15:43 +0000)]
fullSeqId should follow preference value
amwaterhouse [Wed, 14 Sep 2005 15:42:45 +0000 (15:42 +0000)]
Make new frame selected
amwaterhouse [Wed, 14 Sep 2005 15:42:26 +0000 (15:42 +0000)]
Remove system out tests
amwaterhouse [Wed, 14 Sep 2005 15:42:08 +0000 (15:42 +0000)]
Copy and paste uses FASTA format
amwaterhouse [Wed, 14 Sep 2005 12:41:04 +0000 (12:41 +0000)]
Call methods in treeCanvas on init
amwaterhouse [Wed, 14 Sep 2005 12:40:49 +0000 (12:40 +0000)]
offy changes
amwaterhouse [Wed, 14 Sep 2005 12:40:29 +0000 (12:40 +0000)]
OutOfMemory try catch
amwaterhouse [Wed, 14 Sep 2005 12:20:48 +0000 (12:20 +0000)]
Use font size, not font height
amwaterhouse [Wed, 14 Sep 2005 11:52:23 +0000 (11:52 +0000)]
Resize for mac
amwaterhouse [Wed, 14 Sep 2005 11:52:06 +0000 (11:52 +0000)]
Use getTreeFont instead of getFont
amwaterhouse [Wed, 14 Sep 2005 11:25:14 +0000 (11:25 +0000)]
add fontname, size and style for trees
amwaterhouse [Wed, 14 Sep 2005 11:24:33 +0000 (11:24 +0000)]
Font change instead of font size
amwaterhouse [Wed, 14 Sep 2005 11:24:13 +0000 (11:24 +0000)]
Add Export tab
amwaterhouse [Wed, 14 Sep 2005 11:23:58 +0000 (11:23 +0000)]
Make button protected
amwaterhouse [Wed, 14 Sep 2005 11:23:10 +0000 (11:23 +0000)]
use fontchooser to change fonts
amwaterhouse [Wed, 14 Sep 2005 11:22:46 +0000 (11:22 +0000)]
Center labels
amwaterhouse [Wed, 14 Sep 2005 11:22:27 +0000 (11:22 +0000)]
Save fonts for trees
amwaterhouse [Wed, 14 Sep 2005 11:22:13 +0000 (11:22 +0000)]
Change fonts in Treepanel
amwaterhouse [Wed, 14 Sep 2005 11:21:48 +0000 (11:21 +0000)]
Add header
amwaterhouse [Wed, 14 Sep 2005 11:20:57 +0000 (11:20 +0000)]
System.gc after outofmemory
amwaterhouse [Wed, 14 Sep 2005 11:20:09 +0000 (11:20 +0000)]
PCA is in outofmemory try-catch
amwaterhouse [Wed, 14 Sep 2005 11:19:16 +0000 (11:19 +0000)]
TreeFont added, binding rebuilt
amwaterhouse [Tue, 13 Sep 2005 17:45:25 +0000 (17:45 +0000)]
Dont respond to mouse movements if alignment wrapped
amwaterhouse [Tue, 13 Sep 2005 17:44:59 +0000 (17:44 +0000)]
Give focus to textarea on startup
amwaterhouse [Tue, 13 Sep 2005 17:44:32 +0000 (17:44 +0000)]
EPSOptions added
amwaterhouse [Tue, 13 Sep 2005 17:44:08 +0000 (17:44 +0000)]
Warn if out of memory
amwaterhouse [Mon, 12 Sep 2005 17:00:39 +0000 (17:00 +0000)]
Remove gaps in regions, not char by char
amwaterhouse [Mon, 12 Sep 2005 17:00:00 +0000 (17:00 +0000)]
Always return true for directories
amwaterhouse [Mon, 12 Sep 2005 16:59:42 +0000 (16:59 +0000)]
null pointers removed
amwaterhouse [Mon, 12 Sep 2005 16:56:12 +0000 (16:56 +0000)]
Null pointers removed
amwaterhouse [Mon, 12 Sep 2005 12:27:08 +0000 (12:27 +0000)]
Dont fastpaint if movement is zero
amwaterhouse [Mon, 12 Sep 2005 12:26:25 +0000 (12:26 +0000)]
Update overview after change
amwaterhouse [Mon, 12 Sep 2005 12:25:58 +0000 (12:25 +0000)]
Update overview in alignmentChanged
amwaterhouse [Mon, 12 Sep 2005 12:23:43 +0000 (12:23 +0000)]
Size checking in drawGraph
amwaterhouse [Mon, 12 Sep 2005 12:23:09 +0000 (12:23 +0000)]
Overview subsamples alignment
amwaterhouse [Thu, 8 Sep 2005 16:32:15 +0000 (16:32 +0000)]
Move tree property change to treePanel
git://source.jalview.org / jalview.git / log