amwaterhouse [Thu, 9 Feb 2006 16:48:57 +0000 (16:48 +0000)]
Feature Settings added to Applet
amwaterhouse [Thu, 9 Feb 2006 14:43:28 +0000 (14:43 +0000)]
If conservation is zero, colour is white
amwaterhouse [Thu, 9 Feb 2006 14:42:54 +0000 (14:42 +0000)]
Drop target must initialise sequences
amwaterhouse [Thu, 9 Feb 2006 14:42:18 +0000 (14:42 +0000)]
New implementation for holding search results
amwaterhouse [Wed, 8 Feb 2006 15:27:00 +0000 (15:27 +0000)]
parseResult takes the title as string. usually null
amwaterhouse [Wed, 8 Feb 2006 15:26:11 +0000 (15:26 +0000)]
Make URL input window bigger
amwaterhouse [Wed, 8 Feb 2006 15:25:50 +0000 (15:25 +0000)]
FormatAdapter throws exception
amwaterhouse [Wed, 8 Feb 2006 15:25:19 +0000 (15:25 +0000)]
Check endRes
amwaterhouse [Wed, 8 Feb 2006 15:23:31 +0000 (15:23 +0000)]
Copy dataset annotations for paste(this)
amwaterhouse [Wed, 8 Feb 2006 15:22:23 +0000 (15:22 +0000)]
Colour above or below threshold
amwaterhouse [Wed, 8 Feb 2006 15:21:42 +0000 (15:21 +0000)]
Report invalid chars
amwaterhouse [Fri, 3 Feb 2006 17:52:15 +0000 (17:52 +0000)]
Added graphtype
amwaterhouse [Fri, 3 Feb 2006 17:50:14 +0000 (17:50 +0000)]
Graphtype added
amwaterhouse [Fri, 3 Feb 2006 17:48:22 +0000 (17:48 +0000)]
Conservation colouring does what it should always have done
amwaterhouse [Fri, 3 Feb 2006 17:47:55 +0000 (17:47 +0000)]
Make java 1.1 compatible
amwaterhouse [Fri, 3 Feb 2006 17:47:32 +0000 (17:47 +0000)]
Slight adjustments
amwaterhouse [Fri, 3 Feb 2006 17:47:05 +0000 (17:47 +0000)]
Fetch sequence(s)
amwaterhouse [Fri, 3 Feb 2006 17:46:25 +0000 (17:46 +0000)]
Java 1.1 compatible
amwaterhouse [Fri, 3 Feb 2006 17:46:11 +0000 (17:46 +0000)]
Many changes
amwaterhouse [Fri, 3 Feb 2006 17:45:32 +0000 (17:45 +0000)]
Save and load graph type
amwaterhouse [Fri, 3 Feb 2006 17:44:53 +0000 (17:44 +0000)]
Max size is 100 for conservation
amwaterhouse [Fri, 3 Feb 2006 17:44:33 +0000 (17:44 +0000)]
Retrieves PFAM alignments
amwaterhouse [Fri, 3 Feb 2006 17:44:15 +0000 (17:44 +0000)]
Slightly bigger for Mac
amwaterhouse [Fri, 3 Feb 2006 17:43:58 +0000 (17:43 +0000)]
Tooltip for multiple graph lines updated
amwaterhouse [Fri, 3 Feb 2006 17:43:32 +0000 (17:43 +0000)]
set index of new annotation
amwaterhouse [Fri, 3 Feb 2006 17:42:19 +0000 (17:42 +0000)]
Allow for non graph annotations in combobox
amwaterhouse [Fri, 3 Feb 2006 17:41:43 +0000 (17:41 +0000)]
Reading features files readded as ref to FeatureRenderer is required
amwaterhouse [Fri, 3 Feb 2006 17:40:49 +0000 (17:40 +0000)]
has ref to annotation
amwaterhouse [Fri, 3 Feb 2006 17:40:26 +0000 (17:40 +0000)]
Add annotation with sequence ref updated
amwaterhouse [Fri, 3 Feb 2006 17:39:41 +0000 (17:39 +0000)]
Reads annotation files
amwaterhouse [Fri, 3 Feb 2006 17:39:03 +0000 (17:39 +0000)]
Applet draws line graphs
amwaterhouse [Fri, 3 Feb 2006 17:38:42 +0000 (17:38 +0000)]
Applet reads in annotation files
amwaterhouse [Fri, 3 Feb 2006 17:37:32 +0000 (17:37 +0000)]
AA properties added
amwaterhouse [Fri, 3 Feb 2006 17:36:59 +0000 (17:36 +0000)]
AA Properties
amwaterhouse [Fri, 3 Feb 2006 17:36:35 +0000 (17:36 +0000)]
New images
amwaterhouse [Fri, 3 Feb 2006 17:36:22 +0000 (17:36 +0000)]
Updated images
amwaterhouse [Fri, 3 Feb 2006 17:36:09 +0000 (17:36 +0000)]
removed
amwaterhouse [Fri, 3 Feb 2006 17:35:14 +0000 (17:35 +0000)]
Removed
amwaterhouse [Mon, 30 Jan 2006 17:14:47 +0000 (17:14 +0000)]
Cancel button is now close button
amwaterhouse [Mon, 30 Jan 2006 17:14:22 +0000 (17:14 +0000)]
Dont draw origin beyond end of alignment
amwaterhouse [Mon, 30 Jan 2006 15:33:08 +0000 (15:33 +0000)]
No need for apply button, just update colours when events occur
amwaterhouse [Mon, 30 Jan 2006 15:32:37 +0000 (15:32 +0000)]
Get min and max colour added
amwaterhouse [Mon, 30 Jan 2006 14:58:09 +0000 (14:58 +0000)]
Can be used for annotation colouring
amwaterhouse [Mon, 30 Jan 2006 14:57:43 +0000 (14:57 +0000)]
Faster paint
amwaterhouse [Mon, 30 Jan 2006 14:57:20 +0000 (14:57 +0000)]
Use Antialias flag
amwaterhouse [Mon, 30 Jan 2006 14:57:06 +0000 (14:57 +0000)]
Smooth fonts added
amwaterhouse [Mon, 30 Jan 2006 14:56:51 +0000 (14:56 +0000)]
Null sequence check
amwaterhouse [Mon, 30 Jan 2006 14:55:58 +0000 (14:55 +0000)]
Monospaced indicator
amwaterhouse [Mon, 30 Jan 2006 14:55:40 +0000 (14:55 +0000)]
Unix drag and drop implemented
amwaterhouse [Mon, 30 Jan 2006 14:55:17 +0000 (14:55 +0000)]
GraphGroups added
amwaterhouse [Mon, 30 Jan 2006 14:54:54 +0000 (14:54 +0000)]
Fast paint update
amwaterhouse [Mon, 30 Jan 2006 14:54:27 +0000 (14:54 +0000)]
Anti alias flag
amwaterhouse [Mon, 30 Jan 2006 14:54:07 +0000 (14:54 +0000)]
Drop annotations onto alignment
amwaterhouse [Mon, 30 Jan 2006 14:53:37 +0000 (14:53 +0000)]
Smooth fonts, annotation Colour
amwaterhouse [Mon, 30 Jan 2006 14:53:04 +0000 (14:53 +0000)]
Smooth font option
amwaterhouse [Mon, 30 Jan 2006 14:48:47 +0000 (14:48 +0000)]
AddAnnotation with start index
amwaterhouse [Mon, 30 Jan 2006 14:46:40 +0000 (14:46 +0000)]
New Class
amwaterhouse [Mon, 30 Jan 2006 14:46:15 +0000 (14:46 +0000)]
New files
amwaterhouse [Mon, 30 Jan 2006 14:45:37 +0000 (14:45 +0000)]
Faster painting
amwaterhouse [Mon, 30 Jan 2006 14:45:10 +0000 (14:45 +0000)]
Allow features in overview window
amwaterhouse [Mon, 30 Jan 2006 14:43:58 +0000 (14:43 +0000)]
Allow embedded applet
jprocter [Thu, 12 Jan 2006 15:07:50 +0000 (15:07 +0000)]
PIR file IO now preserves and parses Modeller style colon-separated fields
jprocter [Thu, 12 Jan 2006 13:34:59 +0000 (13:34 +0000)]
DBRefEntry made for sequences retrieved from the PDB
jprocter [Thu, 12 Jan 2006 13:32:33 +0000 (13:32 +0000)]
<No Comment Entered>
jprocter [Thu, 12 Jan 2006 12:21:21 +0000 (12:21 +0000)]
ensured properties are loaded before loggers are initialised.
jprocter [Wed, 11 Jan 2006 13:27:21 +0000 (13:27 +0000)]
refactored Alignframe padGaps code to Alignment and Added AlignmentI method.
amwaterhouse [Thu, 22 Dec 2005 17:07:07 +0000 (17:07 +0000)]
Check for null StringBuffer in getPDB
amwaterhouse [Thu, 22 Dec 2005 16:46:46 +0000 (16:46 +0000)]
Check for null StringBuffer in getPDB
amwaterhouse [Thu, 22 Dec 2005 16:01:52 +0000 (16:01 +0000)]
Jar file 20% smaller
amwaterhouse [Thu, 22 Dec 2005 16:00:57 +0000 (16:00 +0000)]
Reduced jar size by 20%
amwaterhouse [Thu, 22 Dec 2005 16:00:30 +0000 (16:00 +0000)]
Allow embedded applet
amwaterhouse [Thu, 22 Dec 2005 15:59:52 +0000 (15:59 +0000)]
graph now has type, not a boolean
amwaterhouse [Thu, 22 Dec 2005 15:59:21 +0000 (15:59 +0000)]
Watch for trim left/right null widths
amwaterhouse [Thu, 22 Dec 2005 15:58:38 +0000 (15:58 +0000)]
REGEX CANNOT BE STATIC
amwaterhouse [Thu, 22 Dec 2005 15:58:09 +0000 (15:58 +0000)]
Wrapped search scrolls to visible result
amwaterhouse [Thu, 22 Dec 2005 15:57:35 +0000 (15:57 +0000)]
Remove import
amwaterhouse [Thu, 22 Dec 2005 15:57:25 +0000 (15:57 +0000)]
Annotations.Graph can be bargraph, linegraph
amwaterhouse [Thu, 22 Dec 2005 15:56:37 +0000 (15:56 +0000)]
Remove printPoints
amwaterhouse [Thu, 22 Dec 2005 15:56:20 +0000 (15:56 +0000)]
Remove main method
amwaterhouse [Thu, 22 Dec 2005 15:55:58 +0000 (15:55 +0000)]
Load assocated tree
jprocter [Fri, 16 Dec 2005 15:34:18 +0000 (15:34 +0000)]
Todo notes for feature issue: 0011711
amwaterhouse [Thu, 15 Dec 2005 15:09:23 +0000 (15:09 +0000)]
Close body and html, dont put in table
amwaterhouse [Thu, 15 Dec 2005 14:54:26 +0000 (14:54 +0000)]
Prevents confusing extra line being output in Java Console
amwaterhouse [Thu, 15 Dec 2005 14:17:12 +0000 (14:17 +0000)]
SetMenuBar(null) when closing frames. Prevents a bug in JVMs post 1.4
amwaterhouse [Tue, 13 Dec 2005 11:09:07 +0000 (11:09 +0000)]
Broken link fixed
amwaterhouse [Tue, 13 Dec 2005 11:01:55 +0000 (11:01 +0000)]
Broken link fixed
amwaterhouse [Tue, 13 Dec 2005 10:37:03 +0000 (10:37 +0000)]
Version update
amwaterhouse [Tue, 13 Dec 2005 10:36:47 +0000 (10:36 +0000)]
Builds web TOC for help files
amwaterhouse [Tue, 13 Dec 2005 10:36:03 +0000 (10:36 +0000)]
Link to applets.html
amwaterhouse [Mon, 12 Dec 2005 18:01:20 +0000 (18:01 +0000)]
Applet new features
amwaterhouse [Mon, 12 Dec 2005 18:00:56 +0000 (18:00 +0000)]
Remove unused mappings
amwaterhouse [Mon, 12 Dec 2005 18:00:26 +0000 (18:00 +0000)]
GetAlignment uses active alignment window
amwaterhouse [Mon, 12 Dec 2005 17:57:02 +0000 (17:57 +0000)]
Inlude mcview in build applet
amwaterhouse [Mon, 12 Dec 2005 15:53:10 +0000 (15:53 +0000)]
Change dataset name
amwaterhouse [Mon, 12 Dec 2005 15:51:48 +0000 (15:51 +0000)]
Change title
amwaterhouse [Mon, 12 Dec 2005 14:47:52 +0000 (14:47 +0000)]
Release date
amwaterhouse [Mon, 12 Dec 2005 14:47:41 +0000 (14:47 +0000)]
DOnt mention WSWublast for now
amwaterhouse [Mon, 12 Dec 2005 14:20:09 +0000 (14:20 +0000)]
Jbinit
amwaterhouse [Mon, 12 Dec 2005 14:15:03 +0000 (14:15 +0000)]
Font size label
amwaterhouse [Mon, 12 Dec 2005 14:14:28 +0000 (14:14 +0000)]
Dont bother with WSWUBlast for now
git://source.jalview.org / jalview.git / log