amwaterhouse [Wed, 23 Mar 2005 15:38:14 +0000 (15:38 +0000)]
drawableSequence removed
amwaterhouse [Wed, 23 Mar 2005 15:37:11 +0000 (15:37 +0000)]
no longer used
amwaterhouse [Wed, 23 Mar 2005 15:36:10 +0000 (15:36 +0000)]
secondarycolour not used
amwaterhouse [Wed, 23 Mar 2005 11:57:37 +0000 (11:57 +0000)]
add .fasta to save dialog
amwaterhouse [Wed, 23 Mar 2005 11:57:06 +0000 (11:57 +0000)]
correct wrap alignment scrollbar size
amwaterhouse [Wed, 23 Mar 2005 11:56:15 +0000 (11:56 +0000)]
resetSeqLimits altered
amwaterhouse [Wed, 23 Mar 2005 11:55:39 +0000 (11:55 +0000)]
override showSaveDialog to prompt user if file exists
amwaterhouse [Tue, 22 Mar 2005 12:18:44 +0000 (12:18 +0000)]
put bioinformatics into message
amwaterhouse [Tue, 22 Mar 2005 12:18:16 +0000 (12:18 +0000)]
drag and drop files into jalview
amwaterhouse [Tue, 22 Mar 2005 12:17:56 +0000 (12:17 +0000)]
add swing runnable to refresh panel on startup
amwaterhouse [Tue, 22 Mar 2005 12:17:29 +0000 (12:17 +0000)]
read start end if available
amwaterhouse [Mon, 21 Mar 2005 18:50:05 +0000 (18:50 +0000)]
altered layout
amwaterhouse [Mon, 21 Mar 2005 18:49:29 +0000 (18:49 +0000)]
alter vgap
amwaterhouse [Mon, 21 Mar 2005 18:48:58 +0000 (18:48 +0000)]
identifies more varied blc files
amwaterhouse [Mon, 21 Mar 2005 18:48:39 +0000 (18:48 +0000)]
blc file reader modified
amwaterhouse [Mon, 21 Mar 2005 18:48:20 +0000 (18:48 +0000)]
add setValue method
amwaterhouse [Mon, 21 Mar 2005 18:47:48 +0000 (18:47 +0000)]
fix select group bug
amwaterhouse [Mon, 21 Mar 2005 18:47:17 +0000 (18:47 +0000)]
new method for outlining groups
amwaterhouse [Mon, 21 Mar 2005 18:46:44 +0000 (18:46 +0000)]
add outline colour
amwaterhouse [Mon, 21 Mar 2005 18:46:25 +0000 (18:46 +0000)]
prevent idpanel being to narrow
amwaterhouse [Mon, 21 Mar 2005 18:45:56 +0000 (18:45 +0000)]
maintain slider values when click on a group
amwaterhouse [Mon, 21 Mar 2005 18:45:18 +0000 (18:45 +0000)]
hide idwidthadjuster if wrapped
amwaterhouse [Mon, 21 Mar 2005 18:44:46 +0000 (18:44 +0000)]
add coloursChanging boolean
amwaterhouse [Mon, 21 Mar 2005 18:42:46 +0000 (18:42 +0000)]
group has outline colour
amwaterhouse [Mon, 21 Mar 2005 18:42:23 +0000 (18:42 +0000)]
use system l&f
amwaterhouse [Mon, 21 Mar 2005 09:55:42 +0000 (09:55 +0000)]
Created by jalview
amwaterhouse [Mon, 21 Mar 2005 09:55:17 +0000 (09:55 +0000)]
correct eps png bug missing last 2 lines
amwaterhouse [Mon, 21 Mar 2005 09:54:50 +0000 (09:54 +0000)]
darkened image
amwaterhouse [Fri, 18 Mar 2005 18:28:17 +0000 (18:28 +0000)]
eps and png output
amwaterhouse [Fri, 18 Mar 2005 18:27:37 +0000 (18:27 +0000)]
remove jpg output
amwaterhouse [Fri, 18 Mar 2005 18:26:21 +0000 (18:26 +0000)]
save eps and png
amwaterhouse [Fri, 18 Mar 2005 18:25:36 +0000 (18:25 +0000)]
delete postscript output!!
jprocter [Fri, 18 Mar 2005 17:42:35 +0000 (17:42 +0000)]
rough JPredService client copied from WebServices project.
amwaterhouse [Fri, 18 Mar 2005 17:34:56 +0000 (17:34 +0000)]
null point bug fixed
jprocter [Fri, 18 Mar 2005 17:23:36 +0000 (17:23 +0000)]
various loadTree bits for loading and saving trees.
jprocter [Fri, 18 Mar 2005 17:08:17 +0000 (17:08 +0000)]
merged Loadtree and EPSfile and changed crlf.
jprocter [Fri, 18 Mar 2005 16:56:38 +0000 (16:56 +0000)]
Save tree.
jprocter [Fri, 18 Mar 2005 16:56:21 +0000 (16:56 +0000)]
Load and Save trees.
jprocter [Fri, 18 Mar 2005 16:54:55 +0000 (16:54 +0000)]
Tree io modifications, including support for polytomous trees by the
generation of dummy nodes.
jprocter [Fri, 18 Mar 2005 16:53:46 +0000 (16:53 +0000)]
New constructors for turning NewickFile objects into renderable trees
mapped onto the current set of sequences by matching leafnames to
sequence names (where one string must contain the other, rather than
direct equivalence).
amwaterhouse [Fri, 18 Mar 2005 16:53:17 +0000 (16:53 +0000)]
add all suffixes to file open
amwaterhouse [Fri, 18 Mar 2005 16:22:50 +0000 (16:22 +0000)]
png and eps
amwaterhouse [Fri, 18 Mar 2005 16:22:26 +0000 (16:22 +0000)]
updated with all schemes in 1 table
amwaterhouse [Fri, 18 Mar 2005 16:21:57 +0000 (16:21 +0000)]
dont' use index at the moment
amwaterhouse [Fri, 18 Mar 2005 16:14:47 +0000 (16:14 +0000)]
eps output facility
amwaterhouse [Fri, 18 Mar 2005 16:12:45 +0000 (16:12 +0000)]
filefilter added
amwaterhouse [Fri, 18 Mar 2005 16:11:37 +0000 (16:11 +0000)]
make eps, png files, filefilter added
amwaterhouse [Fri, 18 Mar 2005 16:10:04 +0000 (16:10 +0000)]
remove unused constants
amwaterhouse [Fri, 18 Mar 2005 16:09:26 +0000 (16:09 +0000)]
use new file filter
amwaterhouse [Fri, 18 Mar 2005 16:09:12 +0000 (16:09 +0000)]
align suffix updated
amwaterhouse [Fri, 18 Mar 2005 16:08:32 +0000 (16:08 +0000)]
acknowledge source and modify to take filter
amwaterhouse [Fri, 18 Mar 2005 16:08:11 +0000 (16:08 +0000)]
new class
amwaterhouse [Fri, 18 Mar 2005 16:07:43 +0000 (16:07 +0000)]
png and eps output added
amwaterhouse [Thu, 17 Mar 2005 17:02:20 +0000 (17:02 +0000)]
hide image with mouse released
amwaterhouse [Thu, 17 Mar 2005 17:02:01 +0000 (17:02 +0000)]
add a border
amwaterhouse [Thu, 17 Mar 2005 16:36:23 +0000 (16:36 +0000)]
relocation of images
amwaterhouse [Thu, 17 Mar 2005 16:33:10 +0000 (16:33 +0000)]
moved to resources
jprocter [Thu, 17 Mar 2005 16:13:18 +0000 (16:13 +0000)]
Newick/New Hampshire tree format parser and generator.
amwaterhouse [Thu, 17 Mar 2005 15:08:48 +0000 (15:08 +0000)]
version and last modified added
amwaterhouse [Thu, 17 Mar 2005 15:08:07 +0000 (15:08 +0000)]
checks for last update
amwaterhouse [Thu, 17 Mar 2005 10:41:46 +0000 (10:41 +0000)]
new image
amwaterhouse [Thu, 17 Mar 2005 10:41:12 +0000 (10:41 +0000)]
idspacefillerpanel has borderlayout
amwaterhouse [Thu, 17 Mar 2005 10:40:36 +0000 (10:40 +0000)]
fullid is optional
amwaterhouse [Thu, 17 Mar 2005 10:40:18 +0000 (10:40 +0000)]
takes into account fullid display
amwaterhouse [Thu, 17 Mar 2005 10:39:36 +0000 (10:39 +0000)]
new class
amwaterhouse [Thu, 17 Mar 2005 10:38:59 +0000 (10:38 +0000)]
idwidth is calculated in alignpanel, not idcanvas
amwaterhouse [Thu, 17 Mar 2005 10:38:38 +0000 (10:38 +0000)]
idwidth is calculated in this panel, not idcanvas
amwaterhouse [Thu, 17 Mar 2005 10:38:00 +0000 (10:38 +0000)]
view full id name optional
amwaterhouse [Wed, 16 Mar 2005 14:53:03 +0000 (14:53 +0000)]
uses jalviewfilechooser
amwaterhouse [Wed, 16 Mar 2005 14:52:21 +0000 (14:52 +0000)]
smaller splashscreen
amwaterhouse [Wed, 16 Mar 2005 14:52:01 +0000 (14:52 +0000)]
scale bug fixed
amwaterhouse [Wed, 16 Mar 2005 14:51:41 +0000 (14:51 +0000)]
selection area search bugs fixed
amwaterhouse [Wed, 16 Mar 2005 14:49:17 +0000 (14:49 +0000)]
New class, allows sorting
amwaterhouse [Tue, 15 Mar 2005 17:10:46 +0000 (17:10 +0000)]
Saves screen size on exit
amwaterhouse [Tue, 15 Mar 2005 16:34:06 +0000 (16:34 +0000)]
setbackground white
amwaterhouse [Tue, 15 Mar 2005 16:33:36 +0000 (16:33 +0000)]
initial label width bug might be fixed at last
amwaterhouse [Tue, 15 Mar 2005 16:33:03 +0000 (16:33 +0000)]
stick with cross platform look and feel!!!
amwaterhouse [Tue, 15 Mar 2005 16:13:12 +0000 (16:13 +0000)]
set groups visible(false)
amwaterhouse [Tue, 15 Mar 2005 16:12:42 +0000 (16:12 +0000)]
new hscrollfillpanel
amwaterhouse [Tue, 15 Mar 2005 16:12:00 +0000 (16:12 +0000)]
use the fileview
amwaterhouse [Tue, 15 Mar 2005 16:08:15 +0000 (16:08 +0000)]
new class
amwaterhouse [Tue, 15 Mar 2005 16:07:24 +0000 (16:07 +0000)]
try system look and feel for a change
amwaterhouse [Tue, 15 Mar 2005 16:06:54 +0000 (16:06 +0000)]
selection removed, now SelectionGroup does same job as id select and residue select
amwaterhouse [Tue, 15 Mar 2005 16:05:35 +0000 (16:05 +0000)]
new file image
amwaterhouse [Thu, 10 Mar 2005 10:13:48 +0000 (10:13 +0000)]
fonts added to properties
amwaterhouse [Thu, 10 Mar 2005 10:13:18 +0000 (10:13 +0000)]
actionlisteners added
amwaterhouse [Thu, 10 Mar 2005 10:12:48 +0000 (10:12 +0000)]
search and font frames are now internalframes
amwaterhouse [Thu, 10 Mar 2005 10:12:16 +0000 (10:12 +0000)]
resized scale panel
amwaterhouse [Thu, 10 Mar 2005 10:12:01 +0000 (10:12 +0000)]
fonts changed as selection made
amwaterhouse [Thu, 10 Mar 2005 10:11:42 +0000 (10:11 +0000)]
Scale canvas not needed
amwaterhouse [Wed, 9 Mar 2005 18:40:15 +0000 (18:40 +0000)]
clear selection once group defined
amwaterhouse [Wed, 9 Mar 2005 18:39:45 +0000 (18:39 +0000)]
clear selection
amwaterhouse [Wed, 9 Mar 2005 18:38:50 +0000 (18:38 +0000)]
delete chars added
amwaterhouse [Wed, 9 Mar 2005 18:37:50 +0000 (18:37 +0000)]
clear selection with escape key
amwaterhouse [Wed, 9 Mar 2005 18:37:09 +0000 (18:37 +0000)]
font chooser added
amwaterhouse [Wed, 9 Mar 2005 18:36:17 +0000 (18:36 +0000)]
allows deletion of chars, font chooser added
amwaterhouse [Wed, 9 Mar 2005 18:35:46 +0000 (18:35 +0000)]
allows deletion of chars
amwaterhouse [Wed, 9 Mar 2005 18:35:03 +0000 (18:35 +0000)]
dont perform blast search at present
amwaterhouse [Tue, 8 Mar 2005 18:12:13 +0000 (18:12 +0000)]
add lower case residue props
jprocter [Tue, 8 Mar 2005 16:45:22 +0000 (16:45 +0000)]
fixed interface for PID method.