cmzmasek [Sun, 20 Jan 2013 06:33:18 +0000 (06:33 +0000)]
keep tilde annotation
cmzmasek [Sun, 20 Jan 2013 05:24:13 +0000 (05:24 +0000)]
keep tilde annotation
cmzmasek@gmail.com [Sat, 19 Jan 2013 02:31:30 +0000 (02:31 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 18 Jan 2013 23:29:13 +0000 (23:29 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 18 Jan 2013 23:27:45 +0000 (23:27 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 18 Jan 2013 23:20:59 +0000 (23:20 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 18 Jan 2013 22:48:33 +0000 (22:48 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 17 Jan 2013 22:53:08 +0000 (22:53 +0000)]
commented out unneed output
cmzmasek@gmail.com [Thu, 17 Jan 2013 22:25:00 +0000 (22:25 +0000)]
commented out unneed output
cmzmasek [Thu, 17 Jan 2013 19:35:33 +0000 (19:35 +0000)]
in progress
cmzmasek@gmail.com [Thu, 17 Jan 2013 02:33:15 +0000 (02:33 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 17 Jan 2013 02:27:28 +0000 (02:27 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 17 Jan 2013 00:28:36 +0000 (00:28 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 17 Jan 2013 00:18:36 +0000 (00:18 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 17 Jan 2013 00:14:48 +0000 (00:14 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 23:30:15 +0000 (23:30 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 22:55:12 +0000 (22:55 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 22:40:12 +0000 (22:40 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 22:37:28 +0000 (22:37 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 22:28:32 +0000 (22:28 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 22:27:30 +0000 (22:27 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 03:12:01 +0000 (03:12 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 03:08:37 +0000 (03:08 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 02:56:03 +0000 (02:56 +0000)]
inprogress
cmzmasek@gmail.com [Wed, 16 Jan 2013 01:06:32 +0000 (01:06 +0000)]
not needed
cmzmasek@gmail.com [Wed, 16 Jan 2013 01:05:14 +0000 (01:05 +0000)]
not needed
cmzmasek@gmail.com [Tue, 15 Jan 2013 18:42:36 +0000 (18:42 +0000)]
removed clustalo
cmzmasek@gmail.com [Tue, 15 Jan 2013 18:41:59 +0000 (18:41 +0000)]
removed clustalo
cmzmasek@gmail.com [Tue, 15 Jan 2013 18:41:46 +0000 (18:41 +0000)]
removed clustalo
cmzmasek@gmail.com [Tue, 15 Jan 2013 18:36:58 +0000 (18:36 +0000)]
removed clustalo
cmzmasek@gmail.com [Tue, 15 Jan 2013 02:32:29 +0000 (02:32 +0000)]
fixed 2nd rio bug
cmzmasek@gmail.com [Tue, 15 Jan 2013 02:29:50 +0000 (02:29 +0000)]
fixed 2nd rio bug
cmzmasek@gmail.com [Sun, 13 Jan 2013 01:44:16 +0000 (01:44 +0000)]
int => long for node id
+ work on rio
cmzmasek@gmail.com [Sat, 12 Jan 2013 04:42:12 +0000 (04:42 +0000)]
int => long for node id
+ work on rio
cmzmasek@gmail.com [Thu, 10 Jan 2013 22:18:39 +0000 (22:18 +0000)]
messed up at the moment
cmzmasek [Thu, 10 Jan 2013 19:25:17 +0000 (19:25 +0000)]
messed up
cmzmasek@gmail.com [Thu, 10 Jan 2013 18:30:08 +0000 (18:30 +0000)]
messed up at the moment
cmzmasek@gmail.com [Wed, 9 Jan 2013 06:10:36 +0000 (06:10 +0000)]
kepp only one dup min gt
cmzmasek@gmail.com [Wed, 9 Jan 2013 06:10:00 +0000 (06:10 +0000)]
kepp only one dup min gt
cmzmasek@gmail.com [Wed, 9 Jan 2013 05:15:59 +0000 (05:15 +0000)]
iterating rio + cleanup
cmzmasek@gmail.com [Wed, 9 Jan 2013 05:14:18 +0000 (05:14 +0000)]
iterating rio + cleanup
cmzmasek@gmail.com [Wed, 9 Jan 2013 05:13:15 +0000 (05:13 +0000)]
iterating nexus test
cmzmasek@gmail.com [Wed, 9 Jan 2013 04:37:05 +0000 (04:37 +0000)]
iterating nexus
cmzmasek@gmail.com [Wed, 9 Jan 2013 04:06:08 +0000 (04:06 +0000)]
iterating nexus
cmzmasek@gmail.com [Tue, 8 Jan 2013 23:56:21 +0000 (23:56 +0000)]
iterating rio + cleanup
cmzmasek@gmail.com [Tue, 8 Jan 2013 20:34:31 +0000 (20:34 +0000)]
inprogress
cmzmasek@gmail.com [Tue, 8 Jan 2013 20:31:11 +0000 (20:31 +0000)]
inprogress
cmzmasek@gmail.com [Tue, 8 Jan 2013 20:14:47 +0000 (20:14 +0000)]
inprogress
cmzmasek@gmail.com [Tue, 8 Jan 2013 03:30:13 +0000 (03:30 +0000)]
iterating rio + cleanup
cmzmasek@gmail.com [Mon, 7 Jan 2013 22:59:41 +0000 (22:59 +0000)]
iterating rio + cleanup
cmzmasek@gmail.com [Mon, 7 Jan 2013 22:07:56 +0000 (22:07 +0000)]
inprogress
cmzmasek [Mon, 7 Jan 2013 04:24:20 +0000 (04:24 +0000)]
in progress
cmzmasek@gmail.com [Sat, 5 Jan 2013 20:04:59 +0000 (20:04 +0000)]
removed view as NHX
cmzmasek@gmail.com [Sat, 5 Jan 2013 20:03:51 +0000 (20:03 +0000)]
removed view as NHX
cmzmasek@gmail.com [Sat, 5 Jan 2013 05:14:27 +0000 (05:14 +0000)]
further reduction of NHX fields
iterating NHX parser
clean up
cmzmasek@gmail.com [Sat, 5 Jan 2013 05:05:26 +0000 (05:05 +0000)]
further reduction of NHX fields
iterating NHX parser
clean up
cmzmasek@gmail.com [Sat, 5 Jan 2013 05:00:34 +0000 (05:00 +0000)]
further reduction of NHX fields
iterating NHX parser
clean up
cmzmasek@gmail.com [Sat, 5 Jan 2013 04:03:13 +0000 (04:03 +0000)]
iterating nh parser
cmzmasek@gmail.com [Sat, 5 Jan 2013 04:02:53 +0000 (04:02 +0000)]
iterating nh parser
cmzmasek@gmail.com [Sat, 5 Jan 2013 03:23:47 +0000 (03:23 +0000)]
removed save as NHX
cmzmasek@gmail.com [Sat, 5 Jan 2013 03:20:46 +0000 (03:20 +0000)]
removed save as NHX
cmzmasek@gmail.com [Sat, 5 Jan 2013 02:37:37 +0000 (02:37 +0000)]
removed view as NHX
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:58:24 +0000 (00:58 +0000)]
fixed hmmscan summary (inprot things are disables for now)
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:56:20 +0000 (00:56 +0000)]
inprogress
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:43:44 +0000 (00:43 +0000)]
inprogress
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:42:04 +0000 (00:42 +0000)]
inprogress
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:10:30 +0000 (00:10 +0000)]
inprogress
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:03:18 +0000 (00:03 +0000)]
inprogress
cmzmasek@gmail.com [Sat, 5 Jan 2013 00:01:10 +0000 (00:01 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 23:59:19 +0000 (23:59 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 23:49:29 +0000 (23:49 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 22:00:42 +0000 (22:00 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:54:26 +0000 (21:54 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:36:13 +0000 (21:36 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:34:02 +0000 (21:34 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:13:45 +0000 (21:13 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:11:27 +0000 (21:11 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 21:10:42 +0000 (21:10 +0000)]
inprogress
cmzmasek@gmail.com [Fri, 4 Jan 2013 02:28:05 +0000 (02:28 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 3 Jan 2013 23:07:19 +0000 (23:07 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 3 Jan 2013 22:55:18 +0000 (22:55 +0000)]
inprogress
cmzmasek@gmail.com [Thu, 3 Jan 2013 22:54:57 +0000 (22:54 +0000)]
iterating nh parser
cmzmasek [Sun, 30 Dec 2012 05:27:19 +0000 (05:27 +0000)]
if ( !lineage.get( i ).equalsIgnoreCase( up_taxonomy.getLineage().get( i ) ) ) {
becomes:
if ( i == up_taxonomy.getLineage().size() || !lineage.get( i ).equalsIgnoreCase( up_taxonomy.getLineage().get( i ) ) ) {
cmzmasek [Sun, 30 Dec 2012 02:31:08 +0000 (02:31 +0000)]
in progress
cmzmasek [Sun, 30 Dec 2012 02:05:30 +0000 (02:05 +0000)]
in progress
cmzmasek [Sun, 30 Dec 2012 01:28:39 +0000 (01:28 +0000)]
Can now set the initial window size via configuration file for application and ArchA applet.
cmzmasek [Sun, 30 Dec 2012 01:28:24 +0000 (01:28 +0000)]
Can now set the initial window size via configuration file for application and ArchA applet.
cmzmasek [Sun, 30 Dec 2012 00:31:49 +0000 (00:31 +0000)]
Can now set the initial window size via configuration file for application and ArchA applet.
cmzmasek [Sun, 30 Dec 2012 00:31:31 +0000 (00:31 +0000)]
Can now set the initial window size via configuration file for application and ArchA applet.
cmzmasek@gmail.com [Sat, 29 Dec 2012 20:32:33 +0000 (20:32 +0000)]
moved to: https://sites.google.com/site/cmzmasek/home/software/forester
cmzmasek@gmail.com [Sat, 29 Dec 2012 01:24:21 +0000 (01:24 +0000)]
ancestor analysis fails on this
cmzmasek@gmail.com [Thu, 27 Dec 2012 03:29:57 +0000 (03:29 +0000)]
"rio" work
cmzmasek@gmail.com [Thu, 27 Dec 2012 03:29:34 +0000 (03:29 +0000)]
"rio" work
cmzmasek@gmail.com [Thu, 27 Dec 2012 00:07:27 +0000 (00:07 +0000)]
inprogress
cmzmasek [Wed, 26 Dec 2012 06:15:37 +0000 (06:15 +0000)]
rio - gsdir work...
cmzmasek [Wed, 26 Dec 2012 06:14:32 +0000 (06:14 +0000)]
rio - gsdir work...
cmzmasek [Wed, 26 Dec 2012 06:09:43 +0000 (06:09 +0000)]
rio - gsdir work...
cmzmasek [Wed, 26 Dec 2012 02:41:00 +0000 (02:41 +0000)]
in progress
cmzmasek [Tue, 25 Dec 2012 06:20:08 +0000 (06:20 +0000)]
in progress
cmzmasek [Mon, 24 Dec 2012 20:44:46 +0000 (20:44 +0000)]
remove single node root
git://source.jalview.org / jalview.git / log