cmzmasek [Tue, 7 Mar 2017 06:47:36 +0000 (22:47 -0800)]
in progress...
cmzmasek [Fri, 3 Mar 2017 00:47:34 +0000 (16:47 -0800)]
updated
cmzmasek [Fri, 3 Mar 2017 00:42:17 +0000 (16:42 -0800)]
removed unneeded files...
cmzmasek [Fri, 3 Mar 2017 00:28:37 +0000 (16:28 -0800)]
removed old files
cmzmasek [Thu, 2 Mar 2017 18:08:07 +0000 (10:08 -0800)]
added some tests for viral codes
cmzmasek [Thu, 2 Mar 2017 02:08:33 +0000 (18:08 -0800)]
need to allow viral taxonomy codes (e.g. HHV3)
cmzmasek [Thu, 2 Mar 2017 02:07:41 +0000 (18:07 -0800)]
need to allow virus taxonomy codes (e.g. HHV3)
cmzmasek [Thu, 2 Mar 2017 01:31:57 +0000 (17:31 -0800)]
removed forced display of found nodes
cmzmasek [Thu, 2 Mar 2017 00:18:03 +0000 (16:18 -0800)]
removed mol seq from toString()
cmzmasek [Wed, 1 Mar 2017 23:37:00 +0000 (15:37 -0800)]
in progress...
cmzmasek [Tue, 28 Feb 2017 02:00:14 +0000 (18:00 -0800)]
in progress...
cmzmasek [Sat, 25 Feb 2017 01:48:39 +0000 (17:48 -0800)]
in progress...
cmzmasek [Sat, 25 Feb 2017 01:26:11 +0000 (17:26 -0800)]
in progress...
cmzmasek [Fri, 24 Feb 2017 01:39:20 +0000 (17:39 -0800)]
in progress...
cmzmasek [Thu, 23 Feb 2017 02:12:52 +0000 (18:12 -0800)]
in progress...
cmzmasek [Wed, 22 Feb 2017 01:42:47 +0000 (17:42 -0800)]
in progress... multi-domain extractor started
cmzmasek [Tue, 21 Feb 2017 05:57:17 +0000 (21:57 -0800)]
in progress...
cmzmasek [Tue, 21 Feb 2017 05:55:18 +0000 (21:55 -0800)]
in progress...
cmzmasek [Sat, 18 Feb 2017 01:03:02 +0000 (17:03 -0800)]
in progress...
cmzmasek [Thu, 16 Feb 2017 01:10:56 +0000 (17:10 -0800)]
in progress
cmzmasek [Tue, 14 Feb 2017 21:53:34 +0000 (13:53 -0800)]
found nodes do not override hiding anymore
cmzmasek [Tue, 14 Feb 2017 20:40:32 +0000 (12:40 -0800)]
corrected error
cmzmasek [Tue, 14 Feb 2017 20:29:48 +0000 (12:29 -0800)]
in progress
cmzmasek [Tue, 14 Feb 2017 18:43:57 +0000 (10:43 -0800)]
in progress
zma [Tue, 14 Feb 2017 18:19:08 +0000 (10:19 -0800)]
Merge branch 'master' of https://github.com/cmzmasek/forester
zma [Tue, 14 Feb 2017 18:10:12 +0000 (10:10 -0800)]
removed
cmzmasek [Mon, 13 Feb 2017 18:08:47 +0000 (10:08 -0800)]
removed lineage
cmzmasek [Fri, 10 Feb 2017 19:32:12 +0000 (11:32 -0800)]
in progress...
zma [Tue, 7 Feb 2017 07:06:35 +0000 (23:06 -0800)]
back from the dead...
cmzmasek [Wed, 14 Dec 2016 21:22:54 +0000 (13:22 -0800)]
synced NH with JS counterpart
cmzmasek [Wed, 14 Dec 2016 21:18:19 +0000 (13:18 -0800)]
synced NH with JS counterpart
cmzmasek [Tue, 8 Nov 2016 23:05:17 +0000 (15:05 -0800)]
in progress...
cmzmasek [Fri, 21 Oct 2016 23:40:54 +0000 (16:40 -0700)]
removed applets
cmzmasek [Fri, 21 Oct 2016 23:38:37 +0000 (16:38 -0700)]
keeping applet code in archive
cmzmasek [Fri, 21 Oct 2016 23:36:33 +0000 (16:36 -0700)]
removed applet code
cmzmasek [Fri, 21 Oct 2016 23:22:22 +0000 (16:22 -0700)]
make PH, aPH, CL selection
cmzmasek [Tue, 18 Oct 2016 17:05:21 +0000 (10:05 -0700)]
aptx v 0.9917 beta
cmzmasek [Wed, 12 Oct 2016 17:48:11 +0000 (10:48 -0700)]
keep it as close with archy.js as possible...
cmzmasek [Thu, 6 Oct 2016 23:27:29 +0000 (16:27 -0700)]
in progress
cmzmasek [Thu, 29 Sep 2016 18:53:12 +0000 (11:53 -0700)]
in progress
cmzmasek [Thu, 18 Aug 2016 18:33:54 +0000 (11:33 -0700)]
0.9916 beta
cmzmasek [Thu, 18 Aug 2016 18:27:59 +0000 (11:27 -0700)]
0.9916 beta
cmzmasek [Wed, 17 Aug 2016 19:20:49 +0000 (12:20 -0700)]
in progress
cmzmasek [Sat, 6 Aug 2016 01:23:47 +0000 (18:23 -0700)]
some additions being added
cmzmasek [Wed, 27 Jul 2016 22:53:47 +0000 (15:53 -0700)]
minor improvements and bug-fixes
cmzmasek [Fri, 15 Jul 2016 17:57:16 +0000 (10:57 -0700)]
removed old v0.90
cmzmasek [Fri, 15 Jul 2016 17:55:41 +0000 (10:55 -0700)]
version 1.20
cmzmasek [Fri, 15 Jul 2016 17:53:51 +0000 (10:53 -0700)]
v1.20
cmzmasek [Fri, 15 Jul 2016 02:28:13 +0000 (19:28 -0700)]
new version
cmzmasek [Fri, 15 Jul 2016 02:26:58 +0000 (19:26 -0700)]
in progress
cmzmasek [Wed, 13 Jul 2016 23:05:39 +0000 (16:05 -0700)]
in progress
cmzmasek [Wed, 13 Jul 2016 01:24:49 +0000 (18:24 -0700)]
in progress
cmzmasek [Fri, 1 Jul 2016 20:47:14 +0000 (13:47 -0700)]
v 1041
cmzmasek [Fri, 1 Jul 2016 20:46:22 +0000 (13:46 -0700)]
updated version numbers
cmzmasek [Fri, 1 Jul 2016 19:43:26 +0000 (12:43 -0700)]
fix size issue when re-sizing text with mouse wheel + ctrl
cmzmasek [Fri, 1 Jul 2016 01:15:17 +0000 (18:15 -0700)]
date was incorrect.
cmzmasek [Fri, 1 Jul 2016 01:14:00 +0000 (18:14 -0700)]
date was incorrect
cmzmasek [Fri, 1 Jul 2016 01:10:43 +0000 (18:10 -0700)]
v40
cmzmasek [Fri, 1 Jul 2016 01:03:47 +0000 (18:03 -0700)]
fixed issues with cutting off of long names in pdf export
cmzmasek [Fri, 1 Jul 2016 01:00:31 +0000 (18:00 -0700)]
fixed issue with cutting off of long names in pdf export + minor changes
cmzmasek [Thu, 30 Jun 2016 21:14:17 +0000 (14:14 -0700)]
unicode chars test
cmzmasek [Thu, 30 Jun 2016 21:11:58 +0000 (14:11 -0700)]
not needed
cmzmasek [Thu, 30 Jun 2016 21:07:22 +0000 (14:07 -0700)]
itextpdf 5.5.9
cmzmasek [Thu, 30 Jun 2016 21:05:22 +0000 (14:05 -0700)]
new itext version, plus minor changes
cmzmasek [Wed, 29 Jun 2016 23:13:25 +0000 (16:13 -0700)]
added a close button
cmzmasek [Wed, 29 Jun 2016 21:02:15 +0000 (14:02 -0700)]
enable phylogram if positive bl edited
cmzmasek [Fri, 24 Jun 2016 01:04:32 +0000 (18:04 -0700)]
made color-all when searching & color subtree optional
cmzmasek [Thu, 23 Jun 2016 23:36:29 +0000 (16:36 -0700)]
0.9910 beta
cmzmasek [Thu, 23 Jun 2016 23:32:32 +0000 (16:32 -0700)]
version 0.9910 beta
cmzmasek [Thu, 23 Jun 2016 22:59:55 +0000 (15:59 -0700)]
fixed issue with UTF8 encoding.
cmzmasek [Wed, 22 Jun 2016 19:49:49 +0000 (12:49 -0700)]
Fixed issue with reading from TreeBase
cmzmasek [Wed, 22 Jun 2016 01:34:02 +0000 (18:34 -0700)]
needed for https for treebase
cmzmasek [Wed, 22 Jun 2016 01:32:50 +0000 (18:32 -0700)]
fixing the treebase issue with https
cmzmasek [Tue, 21 Jun 2016 23:51:47 +0000 (16:51 -0700)]
removed defunct items
cmzmasek [Tue, 21 Jun 2016 23:37:32 +0000 (16:37 -0700)]
fixed some minor issues
cmzmasek [Thu, 14 May 2015 18:26:45 +0000 (11:26 -0700)]
to include changes from today
cmzmasek [Thu, 14 May 2015 18:24:17 +0000 (11:24 -0700)]
bug fixes and clean-up
cmzmasek [Thu, 14 May 2015 18:04:49 +0000 (11:04 -0700)]
Merge branch 'master' of https://github.com/cmzmasek/forester
cmzmasek [Thu, 14 May 2015 18:02:12 +0000 (11:02 -0700)]
more tests for isDuplication() and isSpecation() added
cmzmasek [Thu, 14 May 2015 18:02:12 +0000 (11:02 -0700)]
more test for isDuplication() and isSpecation() added (phyloXML encoded
tree)
cmzmasek [Thu, 14 May 2015 17:31:58 +0000 (10:31 -0700)]
Merge branch 'master' of https://github.com/cmzmasek/forester
cmzmasek [Thu, 14 May 2015 17:18:15 +0000 (10:18 -0700)]
Return null instead of throwing a NPE (issue: NPE in
NodeData.getSequence())
Change-Id: I19d7921cee63fcd1efa350787c2f2f54500ac291
Signed-off-by: cmzmasek <cmzmasek@yahoo.com>
cmzmasek [Thu, 14 May 2015 17:08:39 +0000 (10:08 -0700)]
Corrected misspelled method names (issue: "Typos in method names in
PhylogenyMethods")
Christian Zmasek [Thu, 14 May 2015 03:12:15 +0000 (20:12 -0700)]
Delete GSDI.wiki
Christian Zmasek [Thu, 14 May 2015 03:11:58 +0000 (20:11 -0700)]
Delete RIO.wiki
cmzmasek [Thu, 14 May 2015 02:46:52 +0000 (19:46 -0700)]
allow confidence values of 0.0 for domains
minor bug fixes
clean up
cmzmasek@gmail.com [Wed, 15 Apr 2015 02:00:22 +0000 (02:00 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 20:29:55 +0000 (20:29 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 20:17:20 +0000 (20:17 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:43:15 +0000 (01:43 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:26:51 +0000 (01:26 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:25:27 +0000 (01:25 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:23:33 +0000 (01:23 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:04:29 +0000 (01:04 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:02:52 +0000 (01:02 +0000)]
in progress
cmzmasek@gmail.com [Thu, 2 Apr 2015 23:35:57 +0000 (23:35 +0000)]
in progress
cmzmasek@gmail.com [Thu, 2 Apr 2015 23:22:19 +0000 (23:22 +0000)]
in progress
cmzmasek@gmail.com [Wed, 1 Apr 2015 00:56:36 +0000 (00:56 +0000)]
in progress
cmzmasek@gmail.com [Wed, 1 Apr 2015 00:56:26 +0000 (00:56 +0000)]
in progress
cmzmasek@gmail.com [Tue, 31 Mar 2015 02:33:45 +0000 (02:33 +0000)]
in progress
git://source.jalview.org / jalview.git / log