amwaterhouse [Fri, 20 May 2005 13:29:48 +0000 (13:29 +0000)]
a flauss changes
amwaterhouse [Fri, 20 May 2005 13:29:06 +0000 (13:29 +0000)]
scroller is now a panel
amwaterhouse [Fri, 20 May 2005 13:28:20 +0000 (13:28 +0000)]
look for startup file
amwaterhouse [Fri, 20 May 2005 13:27:48 +0000 (13:27 +0000)]
scroller is now a panel, removes border
amwaterhouse [Fri, 20 May 2005 11:01:07 +0000 (11:01 +0000)]
change ActionListeners to ItemListeners
amwaterhouse [Fri, 20 May 2005 10:48:32 +0000 (10:48 +0000)]
not centered
amwaterhouse [Fri, 20 May 2005 10:47:51 +0000 (10:47 +0000)]
removed
amwaterhouse [Fri, 20 May 2005 10:47:21 +0000 (10:47 +0000)]
apostrophes
amwaterhouse [Fri, 20 May 2005 09:27:38 +0000 (09:27 +0000)]
copy order maintained
jprocter [Fri, 20 May 2005 09:18:05 +0000 (09:18 +0000)]
xml-apis from the same place as xercesImpl.jar
This was needed to make the axis.jar happy using my (jims)
Jbuilder2005 buid environment.
jprocter [Fri, 20 May 2005 09:04:54 +0000 (09:04 +0000)]
This is the xercesImpl.jar from xerces-2_6_2
amwaterhouse [Fri, 20 May 2005 09:01:33 +0000 (09:01 +0000)]
deleted
amwaterhouse [Fri, 20 May 2005 08:57:27 +0000 (08:57 +0000)]
Updated
amwaterhouse [Fri, 20 May 2005 08:56:40 +0000 (08:56 +0000)]
Updated
amwaterhouse [Fri, 20 May 2005 08:55:10 +0000 (08:55 +0000)]
Updated
jprocter [Fri, 20 May 2005 08:26:37 +0000 (08:26 +0000)]
Fixing the broken cvs.
amwaterhouse [Fri, 20 May 2005 08:19:38 +0000 (08:19 +0000)]
updated
amwaterhouse [Fri, 20 May 2005 08:16:59 +0000 (08:16 +0000)]
xml schemas
amwaterhouse [Fri, 20 May 2005 08:14:56 +0000 (08:14 +0000)]
castor lib
amwaterhouse [Fri, 20 May 2005 07:55:26 +0000 (07:55 +0000)]
Fasta FASTA
amwaterhouse [Thu, 19 May 2005 18:01:47 +0000 (18:01 +0000)]
image changes
amwaterhouse [Thu, 19 May 2005 18:01:01 +0000 (18:01 +0000)]
new libraries for XML binding
amwaterhouse [Thu, 19 May 2005 18:00:03 +0000 (18:00 +0000)]
returns name if given colourscheme
amwaterhouse [Thu, 19 May 2005 17:59:20 +0000 (17:59 +0000)]
A Flauss reccommends
amwaterhouse [Thu, 19 May 2005 17:59:01 +0000 (17:59 +0000)]
A Flauss recommends
amwaterhouse [Thu, 19 May 2005 17:58:27 +0000 (17:58 +0000)]
A flauss recommendations
amwaterhouse [Thu, 19 May 2005 17:57:57 +0000 (17:57 +0000)]
filechooser has multiple filters
amwaterhouse [Thu, 19 May 2005 17:57:34 +0000 (17:57 +0000)]
loading/saving changes
amwaterhouse [Thu, 19 May 2005 17:56:57 +0000 (17:56 +0000)]
changes to jalviewfilechooser
amwaterhouse [Thu, 19 May 2005 17:56:31 +0000 (17:56 +0000)]
% identity is consensus
amwaterhouse [Thu, 19 May 2005 17:55:34 +0000 (17:55 +0000)]
no need for right mouse click
amwaterhouse [Thu, 19 May 2005 17:55:04 +0000 (17:55 +0000)]
Load and Save State added
amwaterhouse [Thu, 19 May 2005 17:54:30 +0000 (17:54 +0000)]
dont show redundant menuitems
amwaterhouse [Thu, 19 May 2005 17:54:11 +0000 (17:54 +0000)]
load in gap symbol
amwaterhouse [Thu, 19 May 2005 17:53:46 +0000 (17:53 +0000)]
block edit bug fixed
amwaterhouse [Thu, 19 May 2005 17:53:14 +0000 (17:53 +0000)]
maintain original threshold value
amwaterhouse [Thu, 19 May 2005 17:52:55 +0000 (17:52 +0000)]
changes to JalviewFileChooser
amwaterhouse [Thu, 19 May 2005 17:51:18 +0000 (17:51 +0000)]
new class
amwaterhouse [Thu, 19 May 2005 17:50:45 +0000 (17:50 +0000)]
calculate max and min for graph
amwaterhouse [Thu, 19 May 2005 17:49:36 +0000 (17:49 +0000)]
release version
amwaterhouse [Thu, 19 May 2005 17:49:08 +0000 (17:49 +0000)]
Copied sequences title altered
amwaterhouse [Thu, 19 May 2005 17:48:21 +0000 (17:48 +0000)]
remove redundant menuitems
amwaterhouse [Thu, 19 May 2005 17:48:02 +0000 (17:48 +0000)]
remove actionevents
amwaterhouse [Thu, 19 May 2005 17:47:37 +0000 (17:47 +0000)]
group editing bug fixed
amwaterhouse [Thu, 19 May 2005 17:47:12 +0000 (17:47 +0000)]
toString () method added
amwaterhouse [Thu, 19 May 2005 17:46:40 +0000 (17:46 +0000)]
Created by Castor
jprocter [Thu, 19 May 2005 14:08:37 +0000 (14:08 +0000)]
The archetypal Multiple Sequence Alignment Web Service
amwaterhouse [Thu, 12 May 2005 09:09:44 +0000 (09:09 +0000)]
conservation removed
amwaterhouse [Thu, 12 May 2005 09:09:19 +0000 (09:09 +0000)]
separator added
amwaterhouse [Thu, 12 May 2005 09:08:34 +0000 (09:08 +0000)]
corrections for find when edit takes place
amwaterhouse [Wed, 11 May 2005 10:44:04 +0000 (10:44 +0000)]
JalviewApplet jbuilder project
amwaterhouse [Wed, 11 May 2005 10:42:18 +0000 (10:42 +0000)]
output newick to textbox
amwaterhouse [Wed, 11 May 2005 10:40:48 +0000 (10:40 +0000)]
reads in treeFile from applet parameter
amwaterhouse [Mon, 9 May 2005 11:02:57 +0000 (11:02 +0000)]
paintComponent. not paint
amwaterhouse [Mon, 9 May 2005 11:02:00 +0000 (11:02 +0000)]
correct conservation errors after edit
amwaterhouse [Mon, 9 May 2005 11:00:34 +0000 (11:00 +0000)]
if imgWidth <0
amwaterhouse [Fri, 6 May 2005 17:07:02 +0000 (17:07 +0000)]
wrap align correction for last row
amwaterhouse [Fri, 6 May 2005 12:35:41 +0000 (12:35 +0000)]
add 1 to fastPaint, in case seqs of different length
amwaterhouse [Fri, 6 May 2005 12:34:47 +0000 (12:34 +0000)]
if clustal + edit, make new clustal
amwaterhouse [Thu, 5 May 2005 13:25:49 +0000 (13:25 +0000)]
pdb end seq and startseq determined here
amwaterhouse [Thu, 5 May 2005 13:25:12 +0000 (13:25 +0000)]
colour by sequence just about works
amwaterhouse [Thu, 5 May 2005 13:24:28 +0000 (13:24 +0000)]
Accelerator on menu takes care of actionkey
jprocter [Thu, 5 May 2005 13:16:39 +0000 (13:16 +0000)]
Added cancel interface for JPred Client and fixed some messages.
jprocter [Thu, 5 May 2005 13:15:25 +0000 (13:15 +0000)]
Moved tree leafname to alignment set matching into SequenceIdMatcher class for
use in other contexts.
jprocter [Thu, 5 May 2005 11:40:24 +0000 (11:40 +0000)]
<No Comment Entered>
amwaterhouse [Thu, 5 May 2005 11:21:59 +0000 (11:21 +0000)]
saveAs .....
amwaterhouse [Thu, 5 May 2005 11:21:42 +0000 (11:21 +0000)]
saveAsNewick
amwaterhouse [Thu, 5 May 2005 10:36:19 +0000 (10:36 +0000)]
moved to jalview.io
amwaterhouse [Thu, 5 May 2005 10:35:44 +0000 (10:35 +0000)]
new place for sequencefeaturefetcher
amwaterhouse [Thu, 5 May 2005 10:35:00 +0000 (10:35 +0000)]
send rotCanvas sequence and viewport
amwaterhouse [Thu, 5 May 2005 10:34:02 +0000 (10:34 +0000)]
pdbfile details not essential to sequence
amwaterhouse [Thu, 5 May 2005 08:54:37 +0000 (08:54 +0000)]
addelement replaces add
amwaterhouse [Wed, 4 May 2005 16:00:13 +0000 (16:00 +0000)]
added remark about right mouse in awt
amwaterhouse [Wed, 4 May 2005 15:59:50 +0000 (15:59 +0000)]
validate and repaint after changing panels
amwaterhouse [Wed, 4 May 2005 15:59:27 +0000 (15:59 +0000)]
mouse listeners added
amwaterhouse [Wed, 4 May 2005 15:22:42 +0000 (15:22 +0000)]
renderer removed
amwaterhouse [Wed, 4 May 2005 15:22:13 +0000 (15:22 +0000)]
no need to send pid, seqnum
amwaterhouse [Wed, 4 May 2005 15:21:38 +0000 (15:21 +0000)]
SequenceRenderer changes
amwaterhouse [Wed, 4 May 2005 15:20:50 +0000 (15:20 +0000)]
no need to send vector pid or seqnum
amwaterhouse [Wed, 4 May 2005 15:20:12 +0000 (15:20 +0000)]
No need for this interface
amwaterhouse [Wed, 4 May 2005 15:10:21 +0000 (15:10 +0000)]
Applet files
jprocter [Tue, 3 May 2005 13:20:27 +0000 (13:20 +0000)]
Better treatment of error states and cancellability in wsclient.
amwaterhouse [Tue, 3 May 2005 12:49:40 +0000 (12:49 +0000)]
formatAdapter.formatSequences and maintain annotation after undo
amwaterhouse [Tue, 3 May 2005 12:48:35 +0000 (12:48 +0000)]
formatAdapter.formats
amwaterhouse [Tue, 3 May 2005 12:48:08 +0000 (12:48 +0000)]
formatAdapter.readFile
amwaterhouse [Tue, 3 May 2005 12:47:18 +0000 (12:47 +0000)]
change Container to Component
amwaterhouse [Tue, 3 May 2005 12:46:13 +0000 (12:46 +0000)]
formatAdapter.formats, remove redundant code
amwaterhouse [Tue, 3 May 2005 12:43:54 +0000 (12:43 +0000)]
1.1 compatible, formatting changes
amwaterhouse [Tue, 3 May 2005 12:42:25 +0000 (12:42 +0000)]
FormatAdapter readFile
amwaterhouse [Tue, 3 May 2005 12:41:39 +0000 (12:41 +0000)]
1.1 compatible
amwaterhouse [Tue, 3 May 2005 12:39:06 +0000 (12:39 +0000)]
findKmers and fetchSequenceFeatures removed
amwaterhouse [Tue, 3 May 2005 12:38:04 +0000 (12:38 +0000)]
Removed as obfuscation of classes wiill change class names
amwaterhouse [Fri, 29 Apr 2005 15:27:31 +0000 (15:27 +0000)]
selects default colour
amwaterhouse [Fri, 29 Apr 2005 15:26:51 +0000 (15:26 +0000)]
just tidying up unused imports
jprocter [Fri, 29 Apr 2005 14:50:01 +0000 (14:50 +0000)]
stopped duplicate jars appearing in jalview.jar
beginning of 'automatic ws client' generation.
amwaterhouse [Fri, 29 Apr 2005 11:05:11 +0000 (11:05 +0000)]
REad in defaultColour
amwaterhouse [Fri, 29 Apr 2005 10:42:48 +0000 (10:42 +0000)]
preferences held statically
amwaterhouse [Fri, 29 Apr 2005 10:41:47 +0000 (10:41 +0000)]
preferences moved to desktop
amwaterhouse [Fri, 29 Apr 2005 10:40:43 +0000 (10:40 +0000)]
read in preferences at start up
jprocter [Thu, 28 Apr 2005 16:15:18 +0000 (16:15 +0000)]
Added MuscleWS back in
git://source.jalview.org / jalview.git / log