jalview.git
6 years agoMerge branch 'Jalview-BH/JAL-3026' into feature/JAL-3144noJTree
gmungoc [Wed, 31 Oct 2018 15:12:58 +0000 (15:12 +0000)]
Merge branch 'Jalview-BH/JAL-3026' into feature/JAL-3144noJTree

6 years agoJAL-3026 skip unsupported HttpURLConnection methods in JS
gmungoc [Wed, 31 Oct 2018 15:10:22 +0000 (15:10 +0000)]
JAL-3026 skip unsupported HttpURLConnection methods in JS

6 years agoJAXB upgrade; URLConnection.getResourceCode()
hansonr [Wed, 31 Oct 2018 06:04:36 +0000 (01:04 -0500)]
JAXB upgrade; URLConnection.getResourceCode()

Conflicts:
swingjs/SwingJS-site.zip
swingjs/net.sf.j2s.core.jar
swingjs/timestamp
swingjs/ver/3.2.4/SwingJS-site.zip
swingjs/ver/3.2.4/net.sf.j2s.core.jar
swingjs/ver/3.2.4/timestamp

6 years agoJAL-3144 left aligned looks better (and works in JalviewJS!)
gmungoc [Tue, 30 Oct 2018 15:48:42 +0000 (15:48 +0000)]
JAL-3144 left aligned looks better (and works in JalviewJS!)

6 years agoJAL-3144 query URL corrected
gmungoc [Tue, 30 Oct 2018 14:08:21 +0000 (14:08 +0000)]
JAL-3144 query URL corrected

6 years agoJAL-3144 close SequenceFetcher before opening PDB/Uniprot panel
gmungoc [Tue, 30 Oct 2018 12:43:26 +0000 (12:43 +0000)]
JAL-3144 close SequenceFetcher before opening PDB/Uniprot panel

6 years agoJAL-3144 spelling, Javadoc, abstract method for JalviewJS
gmungoc [Tue, 30 Oct 2018 10:32:27 +0000 (10:32 +0000)]
JAL-3144 spelling, Javadoc, abstract method for JalviewJS

6 years agoMerge branch 'Jalview-BH/JAL-3026' into feature/JAL-3144noJTree
gmungoc [Tue, 30 Oct 2018 08:05:43 +0000 (08:05 +0000)]
Merge branch 'Jalview-BH/JAL-3026' into feature/JAL-3144noJTree

6 years agoJAL-3144 SequenceFetcher without JDatabaseTree
gmungoc [Mon, 29 Oct 2018 16:13:23 +0000 (16:13 +0000)]
JAL-3144 SequenceFetcher without JDatabaseTree

6 years agoJAL-3038 add ActionListener and FocusListener to SwingJS mode
gmungoc [Mon, 29 Oct 2018 15:02:39 +0000 (15:02 +0000)]
JAL-3038 add ActionListener and FocusListener to SwingJS mode

6 years agononfunctional testing directory - just so I can see how it compiles.
hansonr [Wed, 17 Oct 2018 17:17:05 +0000 (12:17 -0500)]
nonfunctional testing directory - just so I can see how it compiles.

6 years agoJmol/SwingJS update. Includes new transpiler and runtime
hansonr [Tue, 18 Sep 2018 05:05:30 +0000 (00:05 -0500)]
Jmol/SwingJS update. Includes new transpiler and runtime

install transpiler
run build-site.xml

6 years agoJAL-3113 override minimum frame size in a way that works in JalviewJS
gmungoc [Tue, 11 Sep 2018 16:37:30 +0000 (17:37 +0100)]
JAL-3113 override minimum frame size in a way that works in JalviewJS

6 years agoJAL-3048 recoded edit View Name dialog for JalviewJS
gmungoc [Tue, 11 Sep 2018 14:04:29 +0000 (15:04 +0100)]
JAL-3048 recoded edit View Name dialog for JalviewJS

6 years agoJAL-3056 offer New / Expand / Gather View in JalviewJS
gmungoc [Tue, 11 Sep 2018 12:41:43 +0000 (13:41 +0100)]
JAL-3056 offer New / Expand / Gather View in JalviewJS

6 years agoJAL-3079 drop use of clip region while drawing wrapped alignment
gmungoc [Mon, 3 Sep 2018 13:42:17 +0000 (14:42 +0100)]
JAL-3079 drop use of clip region while drawing wrapped alignment

6 years agoMerge branch 'bug/JAL-3003epsWithSelection' into trialMerge
gmungoc [Fri, 31 Aug 2018 08:49:55 +0000 (09:49 +0100)]
Merge branch 'bug/JAL-3003epsWithSelection' into trialMerge

Conflicts:
src/jalview/gui/SeqCanvas.java

6 years agoMerge branch 'bug/JAL-247pngShowHiddenSeqMarks' into trialMerge
gmungoc [Thu, 30 Aug 2018 15:30:32 +0000 (16:30 +0100)]
Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into trialMerge

6 years agoJAL-3055 refinements to alternatives to deriveFont
gmungoc [Thu, 30 Aug 2018 15:28:01 +0000 (16:28 +0100)]
JAL-3055 refinements to alternatives to deriveFont

6 years agoJAL-3079 don't create new Graphics to draw as it confuses PDFGraphics
gmungoc [Thu, 30 Aug 2018 15:27:33 +0000 (16:27 +0100)]
JAL-3079 don't create new Graphics to draw as it confuses PDFGraphics

6 years agoJAL-3055 corrected logo drawing in JS
gmungoc [Tue, 28 Aug 2018 15:55:58 +0000 (16:55 +0100)]
JAL-3055 corrected logo drawing in JS

6 years agoJAL-3055 corrections to use of AffineTransform to scale characters
gmungoc [Tue, 28 Aug 2018 11:32:01 +0000 (12:32 +0100)]
JAL-3055 corrections to use of AffineTransform to scale characters

6 years agoButton/mouse tests
hansonr [Tue, 28 Aug 2018 03:43:18 +0000 (22:43 -0500)]
Button/mouse tests

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Tue, 28 Aug 2018 03:35:35 +0000 (22:35 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3026 mouse event overhaul; Jmol working (some "black label" issue?
hansonr [Tue, 28 Aug 2018 03:34:40 +0000 (22:34 -0500)]
JAL-3026 mouse event overhaul; Jmol working (some "black label" issue?

pull, build-site

6 years agoJAL-3026 alignmentFrame.statusBar.setText -> .setStatus
hansonr [Mon, 27 Aug 2018 16:09:53 +0000 (11:09 -0500)]
JAL-3026 alignmentFrame.statusBar.setText -> .setStatus

6 years agoJAL-3055 restore original deriveFont code for Java runtime
gmungoc [Mon, 27 Aug 2018 14:30:25 +0000 (15:30 +0100)]
JAL-3055 restore original deriveFont code for Java runtime

6 years agoBob's site directory JAL-3026
hansonr [Mon, 27 Aug 2018 13:39:36 +0000 (08:39 -0500)]
Bob's site directory JAL-3026

6 years agoJAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks
gmungoc [Mon, 27 Aug 2018 09:19:28 +0000 (10:19 +0100)]
JAL-247 comment to clarify wrapped print algorithm

6 years agoJAL-3026 Jmol functioning; some issues
hansonr [Mon, 27 Aug 2018 08:36:29 +0000 (03:36 -0500)]
JAL-3026 Jmol functioning; some issues

Reworked mouse event handling. Temporarily lost out-of-frame business.
Or, more specifically, hovering over the scroll bar to auto-scroll.

6 years agoJAL-247 print/export wrapped uses common code to draw seq ids and
gmungoc [Fri, 24 Aug 2018 15:16:08 +0000 (16:16 +0100)]
JAL-247 print/export wrapped uses common code to draw seq ids and
annotation labels

6 years agoJAL-3087 include full alignment height in repeating wrapped height
gmungoc [Fri, 24 Aug 2018 14:32:44 +0000 (15:32 +0100)]
JAL-3087 include full alignment height in repeating wrapped height

6 years agoJAL-247 draw/print sequence ids now uses common code (unwrapped case)
gmungoc [Fri, 24 Aug 2018 09:06:41 +0000 (10:06 +0100)]
JAL-247 draw/print sequence ids now uses common code (unwrapped case)

6 years agoJAL-3026 Java bug associated with File/String mods
hansonr [Fri, 24 Aug 2018 07:35:44 +0000 (02:35 -0500)]
JAL-3026 Java bug associated with File/String mods

in AlignFrame lines 4586,4592

6 years agoJAL-3026 GD#107,128,130,139 build-site.xml
hansonr [Fri, 24 Aug 2018 07:26:06 +0000 (02:26 -0500)]
JAL-3026 GD#107,128,130,139 build-site.xml

JInternalFrame z-order issues resolved
EBIFeching via server proxy as no access-control-origin:*
Temp file creation by File.createTempFile

Jmol app fixes for virtual key issues and starting to display now. Still
not dynamic, though. (No mouse action)

URL downloads now allow checking of status code (actually a hack, just
200 or 404, but we can get access to the real code.

6 years agoJAL-3059 use correct border colour for groups
gmungoc [Thu, 23 Aug 2018 12:28:52 +0000 (13:28 +0100)]
JAL-3059 use correct border colour for groups

6 years agoJAL-3003 draw selection group outline on main graphics context
gmungoc [Thu, 23 Aug 2018 12:27:10 +0000 (13:27 +0100)]
JAL-3003 draw selection group outline on main graphics context

6 years agoJAL-3026 GD#127 frame selection/toFront
hansonr [Wed, 22 Aug 2018 16:32:03 +0000 (11:32 -0500)]
JAL-3026 GD#127 frame selection/toFront

6 years agoJAL-3026 JavaScript tests moved to utils/test
hansonr [Wed, 22 Aug 2018 10:49:20 +0000 (05:49 -0500)]
JAL-3026 JavaScript tests moved to utils/test

6 years agoJAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration
gmungoc [Wed, 22 Aug 2018 10:31:04 +0000 (11:31 +0100)]
JAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Tue, 21 Aug 2018 19:30:23 +0000 (14:30 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3026 GD #118 tooltip not showing for components.
hansonr [Tue, 21 Aug 2018 18:36:43 +0000 (13:36 -0500)]
JAL-3026  GD #118 tooltip not showing for components.

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Tue, 21 Aug 2018 18:36:43 +0000 (13:36 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3026 Boolean upgrade to Java 8
hansonr [Tue, 21 Aug 2018 18:30:37 +0000 (13:30 -0500)]
JAL-3026 Boolean upgrade to Java 8

6 years agoMerge branch 'Jalview-BH/JAL-3026' of
hansonr [Tue, 21 Aug 2018 18:30:37 +0000 (13:30 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of
https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Conflicts:
swingjs/SwingJS-site.zip
swingjs/timestamp
swingjs/ver/3.2.2/SwingJS-site.zip
swingjs/ver/3.2.2/timestamp

6 years agoJAL-3026 GD#137 Boolean upgrade requires build-site.xml only
hansonr [Tue, 21 Aug 2018 18:21:16 +0000 (13:21 -0500)]
JAL-3026 GD#137 Boolean upgrade  requires build-site.xml only

6 years agoJAL-3026 GD#137 Boolean upgrade requires build-site.xml only
hansonr [Tue, 21 Aug 2018 18:21:16 +0000 (13:21 -0500)]
JAL-3026 GD#137 Boolean upgrade  requires build-site.xml only

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Tue, 21 Aug 2018 17:15:55 +0000 (12:15 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3027 GD#140 checkbox/radio text alignment not coded in
hansonr [Tue, 21 Aug 2018 17:15:08 +0000 (12:15 -0500)]
JAL-3027 GD#140 checkbox/radio text alignment not coded in
JSRadioButtonUI  - requires build-site.xml

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
gmungoc [Tue, 21 Aug 2018 13:59:50 +0000 (14:59 +0100)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3032 MCview package renamed mc_view in test classes
gmungoc [Tue, 21 Aug 2018 13:59:38 +0000 (14:59 +0100)]
JAL-3032 MCview package renamed mc_view in test classes

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Tue, 21 Aug 2018 13:00:09 +0000 (08:00 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3026 fixes Jmol going into debug mode
hansonr [Tue, 21 Aug 2018 12:59:38 +0000 (07:59 -0500)]
JAL-3026 fixes Jmol going into debug mode

much faster PDB file processing if it doesn't print every line as it
goes!

6 years agoJAL-2717 corrected i18n of colour scheme names
gmungoc [Tue, 21 Aug 2018 12:59:37 +0000 (13:59 +0100)]
JAL-2717 corrected i18n of colour scheme names

6 years agoJAL-3026 fixes ?j2strace=xxx message, user.home, error msg in
hansonr [Tue, 21 Aug 2018 12:14:33 +0000 (07:14 -0500)]
JAL-3026 fixes ?j2strace=xxx message, user.home, error msg in
ItentifiersUrlProvider

6 years agoJAL-3032 JAL-3084 test class for JS layout bug(s)
gmungoc [Tue, 21 Aug 2018 11:16:50 +0000 (12:16 +0100)]
JAL-3032 JAL-3084 test class for JS layout bug(s)

6 years agoJAL-3026 JSONObject: removing annotation sensing
hansonr [Tue, 21 Aug 2018 05:00:16 +0000 (00:00 -0500)]
JAL-3026 JSONObject: removing annotation sensing

6 years agoswingjs.JSSAXParser working for Jalview
hansonr [Tue, 21 Aug 2018 04:33:09 +0000 (23:33 -0500)]
swingjs.JSSAXParser working for Jalview

6 years agoJAL-3026 JmolData running; new run time and transpiler.
hansonr [Tue, 21 Aug 2018 02:12:36 +0000 (21:12 -0500)]
JAL-3026 JmolData running; new run time and transpiler.

Run build-site.xml and possibly do a clean build.

6 years agomc_view references were MCview
hansonr [Tue, 21 Aug 2018 02:10:41 +0000 (21:10 -0500)]
mc_view references were MCview

6 years agoJAL-3026 MCview -> mc_view
hansonr [Tue, 21 Aug 2018 02:09:25 +0000 (21:09 -0500)]
JAL-3026 MCview -> mc_view

SwingJS requires standard package and class capitalization;
_ added to avoid PC capitalization issue

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Mon, 20 Aug 2018 15:24:19 +0000 (10:24 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJAL-3026 j2sClazz.js fixes
hansonr [Mon, 20 Aug 2018 15:23:49 +0000 (10:23 -0500)]
JAL-3026 j2sClazz.js fixes

// BH 8/20/2018 3.2.2.04 adds character.isJavaIdentifierPart$C and
several Character...$I equivalents
// BH 8/19/2018 3.2.2.04 fixes Enum .name being .$name
// BH 8/16/2018 3.2.2.04 fixes Character.toTitleCase$C,
[Integer,Long,Short,Byte].toString(i,radix)

6 years agoJAL-3032 Feature Settings menu item always enabled (restored)
gmungoc [Mon, 20 Aug 2018 12:52:46 +0000 (13:52 +0100)]
JAL-3032 Feature Settings menu item always enabled (restored)

6 years agoJAL-3032 variant of Sequence Details panel for JalviewJS
gmungoc [Mon, 20 Aug 2018 10:52:01 +0000 (11:52 +0100)]
JAL-3032 variant of Sequence Details panel for JalviewJS

6 years agoJAL-3084 force EPS output to "Text" for JalviewJS
gmungoc [Mon, 20 Aug 2018 09:57:09 +0000 (10:57 +0100)]
JAL-3084 force EPS output to "Text" for JalviewJS

6 years agoJAL-3084 hide startup file, Chimera, HTML/SVG, Web Services options/tab
gmungoc [Mon, 20 Aug 2018 09:32:14 +0000 (10:32 +0100)]
JAL-3084 hide startup file, Chimera, HTML/SVG, Web Services options/tab
in JalviewJS

6 years agoAdds org.json (along with "org.json.simple") for
hansonr [Mon, 20 Aug 2018 05:39:18 +0000 (00:39 -0500)]
Adds org.json (along with "org.json.simple") for
jalview.io.JSONFile.java

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Mon, 20 Aug 2018 04:23:06 +0000 (23:23 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agofixes for anonymous classes; preliminary Jmol classes
hansonr [Mon, 20 Aug 2018 04:22:24 +0000 (23:22 -0500)]
fixes for anonymous classes; preliminary Jmol classes

Problem: anonymous classes that reference superclass finals may not
escape them properly with $. (drag-drop of PDB file)

Jmol classes into libjs, but not working yet, since we need to now
distinguish between JavaScript/AWT for application and JavaScript/noAWT
for standard JSmol applet

6 years agoJAL-3048 remove obsolete way of handling dialogs in JalviewJS
gmungoc [Fri, 17 Aug 2018 13:57:49 +0000 (14:57 +0100)]
JAL-3048 remove obsolete way of handling dialogs in JalviewJS

6 years agoJAL-3048 adapt 'input from URL' dialog for JalviewJS
gmungoc [Fri, 17 Aug 2018 13:57:12 +0000 (14:57 +0100)]
JAL-3048 adapt 'input from URL' dialog for JalviewJS

6 years agoJAL-3038 unit test updates for JalviewJS workaround hack
gmungoc [Fri, 17 Aug 2018 10:38:33 +0000 (11:38 +0100)]
JAL-3038 unit test updates for JalviewJS workaround hack

6 years agoJAL-3038 workaround to replace editable combobox with text field in JS
gmungoc [Thu, 16 Aug 2018 14:07:35 +0000 (15:07 +0100)]
JAL-3038 workaround to replace editable combobox with text field in JS

6 years agoJAL-3026 Character.toUpperCase
hansonr [Thu, 16 Aug 2018 13:13:45 +0000 (08:13 -0500)]
JAL-3026 Character.toUpperCase

6 years agoJAL-3026 SwingJS-site.zip fix
hansonr [Thu, 16 Aug 2018 12:55:30 +0000 (07:55 -0500)]
JAL-3026 SwingJS-site.zip fix

6 years agoMerge branch 'bug/JAL-3082selectRegex' into Jalview-BH/JAL-3026
gmungoc [Thu, 16 Aug 2018 09:08:49 +0000 (10:08 +0100)]
Merge branch 'bug/JAL-3082selectRegex' into Jalview-BH/JAL-3026

6 years agoJAL-3082 one more test condition bug/JAL-3082selectRegex
gmungoc [Thu, 16 Aug 2018 09:00:07 +0000 (10:00 +0100)]
JAL-3082 one more test condition

6 years agoJAL-3082 handle regex error, exclusive threshold, unit tests
gmungoc [Thu, 16 Aug 2018 08:56:36 +0000 (09:56 +0100)]
JAL-3082 handle regex error, exclusive threshold, unit tests

6 years agoJava2Script 3.2.2_04 fixes Clazz._exceptionOf P$ issue
hansonr [Thu, 16 Aug 2018 02:11:55 +0000 (21:11 -0500)]
Java2Script 3.2.2_04 fixes Clazz._exceptionOf P$ issue

6 years agoJAL-3048 use JS-compatible JvOptionPane method
gmungoc [Wed, 15 Aug 2018 11:17:27 +0000 (12:17 +0100)]
JAL-3048 use JS-compatible JvOptionPane method

6 years agoMerge branch 'feature/JAL-3080clearTreeGroups' into Jalview-BH/JAL-3026
gmungoc [Wed, 15 Aug 2018 10:02:47 +0000 (11:02 +0100)]
Merge branch 'feature/JAL-3080clearTreeGroups' into Jalview-BH/JAL-3026

6 years agoJAL-3080 remove tree partition if no groups created feature/JAL-3080clearTreeGroups
gmungoc [Wed, 15 Aug 2018 10:01:27 +0000 (11:01 +0100)]
JAL-3080 remove tree partition if no groups created

6 years agoJAL-3078 reset Tree font (only!) on Cancel bug/JAL-3078cancelTreeFont
gmungoc [Tue, 14 Aug 2018 15:55:13 +0000 (16:55 +0100)]
JAL-3078 reset Tree font (only!) on Cancel

6 years agoJAL-3032 tidy AlignmentProperties display for JalviewJS
gmungoc [Tue, 14 Aug 2018 13:04:06 +0000 (14:04 +0100)]
JAL-3032 tidy AlignmentProperties display for JalviewJS

6 years agoJAL-3056 no Save/Load colours xml in JalviewJS
gmungoc [Tue, 14 Aug 2018 10:04:02 +0000 (11:04 +0100)]
JAL-3056 no Save/Load colours xml in JalviewJS

6 years agoJAL-3026 refines, generalizes build-site.xml
hansonr [Sun, 12 Aug 2018 12:27:30 +0000 (07:27 -0500)]
JAL-3026 refines, generalizes build-site.xml

6 years agoJAL-3026 refines, generalizes build-site.xml
hansonr [Sun, 12 Aug 2018 12:21:37 +0000 (07:21 -0500)]
JAL-3026 refines, generalizes build-site.xml

6 years agoMerge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git...
hansonr [Sun, 12 Aug 2018 11:37:05 +0000 (06:37 -0500)]
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

6 years agoJava2Script 3.2.2 upgrade
hansonr [Sun, 12 Aug 2018 05:19:01 +0000 (00:19 -0500)]
Java2Script 3.2.2 upgrade

6 years agoJAL-3026 major update 1/2
gmungoc [Thu, 26 Jul 2018 15:42:14 +0000 (16:42 +0100)]
JAL-3026 major update 1/2

- Java2Script 3.2.2 Java 8 ready
- fix for scrollbar returning 3.99999996 instead of 4
- fix for checkboxes too low

- drop in new transpiler
- run eclipsec -clean
- run build-site.xml

6 years agoJAL-3056 suppress Lineart option in JalviewJS
gmungoc [Fri, 10 Aug 2018 15:44:24 +0000 (16:44 +0100)]
JAL-3056 suppress Lineart option in JalviewJS

6 years agoJAL-3071 turn off 'mousedDragging' when stopping scrolling
gmungoc [Thu, 26 Jul 2018 15:42:14 +0000 (16:42 +0100)]
JAL-3071 turn off 'mousedDragging' when stopping scrolling

6 years agoJAL-3071 IdPanel.ScrollThread for JalviewJS, Javadoc
gmungoc [Thu, 26 Jul 2018 12:38:12 +0000 (13:38 +0100)]
JAL-3071 IdPanel.ScrollThread for JalviewJS, Javadoc

6 years agoJAL-3071 SeqPanel scroll thread now interruptible in JalviewJS
gmungoc [Thu, 26 Jul 2018 10:15:44 +0000 (11:15 +0100)]
JAL-3071 SeqPanel scroll thread now interruptible in JalviewJS

6 years agoMerge remote-tracking branch 'origin/bug/JAL-3072scrollThread' into Jalview-BH/JAL...
gmungoc [Thu, 26 Jul 2018 06:59:46 +0000 (07:59 +0100)]
Merge remote-tracking branch 'origin/bug/JAL-3072scrollThread' into Jalview-BH/JAL-3026

6 years agoJAL-3073 select columns if dragging sideways in a graph annotation bug/JAL-3072scrollThread
gmungoc [Wed, 25 Jul 2018 16:36:13 +0000 (17:36 +0100)]
JAL-3073 select columns if dragging sideways in a graph annotation

6 years agoJAL-3074 don't scroll up/down on drag out of scale or annotation panel, performance...
gmungoc [Wed, 25 Jul 2018 15:41:02 +0000 (16:41 +0100)]
JAL-3074 don't scroll up/down on drag out of scale or annotation panel, performance tweaks

6 years agoJAL-3072 SeqPanel.stopScrolling on mouse up in scale or annotation panel
gmungoc [Wed, 25 Jul 2018 10:43:21 +0000 (11:43 +0100)]
JAL-3072 SeqPanel.stopScrolling on mouse up in scale or annotation panel

6 years agoJAL-3026 Java 8 upgrade and JTabbedPane
hansonr [Wed, 25 Jul 2018 07:11:13 +0000 (02:11 -0500)]
JAL-3026 Java 8 upgrade and JTabbedPane