jalview.git
12 years agosome fixes
cmzmasek [Thu, 8 Dec 2011 21:28:43 +0000 (21:28 +0000)]
some fixes

12 years agosome fixes
cmzmasek [Thu, 8 Dec 2011 21:27:18 +0000 (21:27 +0000)]
some fixes

12 years agoexperimental changes to surfacing methods
cmzmasek [Thu, 8 Dec 2011 18:42:04 +0000 (18:42 +0000)]
experimental changes to surfacing methods

12 years agoin progress
cmzmasek@gmail.com [Thu, 8 Dec 2011 16:03:53 +0000 (16:03 +0000)]
in progress

12 years agoin progress
cmzmasek@gmail.com [Wed, 7 Dec 2011 16:05:57 +0000 (16:05 +0000)]
in progress

12 years agoin progress
cmzmasek@gmail.com [Wed, 7 Dec 2011 15:48:16 +0000 (15:48 +0000)]
in progress

12 years agoin progress
cmzmasek@gmail.com [Tue, 6 Dec 2011 23:54:46 +0000 (23:54 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Sat, 26 Nov 2011 04:42:05 +0000 (04:42 +0000)]
in progress

13 years agoadded infraorder
cmzmasek@gmail.com [Sat, 19 Nov 2011 03:38:37 +0000 (03:38 +0000)]
added infraorder

13 years agoadded infraorder
cmzmasek@gmail.com [Sat, 19 Nov 2011 03:38:18 +0000 (03:38 +0000)]
added infraorder

13 years agoto download from ensembl ftp site
cmzmasek@gmail.com [Wed, 9 Nov 2011 20:09:03 +0000 (20:09 +0000)]
to download from ensembl ftp site

13 years agoto download from ensembl ftp site
cmzmasek@gmail.com [Wed, 9 Nov 2011 20:07:36 +0000 (20:07 +0000)]
to download from ensembl ftp site

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 04:01:08 +0000 (04:01 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 04:00:31 +0000 (04:00 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:56:12 +0000 (03:56 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:54:36 +0000 (03:54 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:54:14 +0000 (03:54 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:53:31 +0000 (03:53 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoEdited wiki page RubyExamples through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:50:48 +0000 (03:50 +0000)]
Edited wiki page RubyExamples through web user interface.

13 years agoCreated wiki page through web user interface.
cmzmasek@gmail.com [Wed, 9 Nov 2011 03:46:55 +0000 (03:46 +0000)]
Created wiki page through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:50:03 +0000 (17:50 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:48:38 +0000 (17:48 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:46:58 +0000 (17:46 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:45:45 +0000 (17:45 +0000)]
Edited wiki page forester through web user interface.

13 years agoAllows now to set most options "manually", with setters...
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:41:40 +0000 (17:41 +0000)]
Allows now to set most options "manually", with setters...

13 years agoAllows now to set most options "manually", with setters...
cmzmasek@gmail.com [Thu, 3 Nov 2011 17:40:28 +0000 (17:40 +0000)]
Allows now to set most options "manually", with setters...

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 06:10:35 +0000 (06:10 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 06:09:40 +0000 (06:09 +0000)]
in progress

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 06:06:01 +0000 (06:06 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 06:05:25 +0000 (06:05 +0000)]
Edited wiki page forester through web user interface.

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:46:59 +0000 (05:46 +0000)]
in progress

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:43:04 +0000 (05:43 +0000)]
Edited wiki page forester through web user interface.

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:42:22 +0000 (05:42 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:41:41 +0000 (05:41 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:36:24 +0000 (05:36 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:36:07 +0000 (05:36 +0000)]
in progress

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:33:10 +0000 (05:33 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:31:34 +0000 (05:31 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:29:16 +0000 (05:29 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:27:52 +0000 (05:27 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:26:45 +0000 (05:26 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:24:58 +0000 (05:24 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:23:55 +0000 (05:23 +0000)]
Edited wiki page forester through web user interface.

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:20:18 +0000 (05:20 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Thu, 3 Nov 2011 05:19:40 +0000 (05:19 +0000)]
in progress

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:37:35 +0000 (20:37 +0000)]
Edited wiki page forester through web user interface.

13 years agoin progress
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:25:08 +0000 (20:25 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:24:45 +0000 (20:24 +0000)]
in progress

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:19:32 +0000 (20:19 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:18:41 +0000 (20:18 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:17:41 +0000 (20:17 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:14:34 +0000 (20:14 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:12:07 +0000 (20:12 +0000)]
Edited wiki page forester through web user interface.

13 years agoEdited wiki page forester through web user interface.
cmzmasek@gmail.com [Wed, 2 Nov 2011 20:08:29 +0000 (20:08 +0000)]
Edited wiki page forester through web user interface.

13 years agoin progress
cmzmasek@gmail.com [Tue, 18 Oct 2011 22:50:08 +0000 (22:50 +0000)]
in progress

13 years agobig refactoring (moving of methods)
cmzmasek@gmail.com [Tue, 18 Oct 2011 22:03:47 +0000 (22:03 +0000)]
big refactoring (moving of methods)

13 years agosmall clean-up.
cmzmasek@gmail.com [Mon, 17 Oct 2011 22:11:43 +0000 (22:11 +0000)]
small clean-up.

13 years agoin progress
cmzmasek@gmail.com [Mon, 17 Oct 2011 21:58:41 +0000 (21:58 +0000)]
in progress

13 years agoThis now needs Apache Commons' codec jar.
cmzmasek@gmail.com [Mon, 17 Oct 2011 21:42:41 +0000 (21:42 +0000)]
This now needs Apache Commons' codec jar.

13 years agomoved classes into different project
cmzmasek@gmail.com [Sat, 15 Oct 2011 23:35:25 +0000 (23:35 +0000)]
moved classes into different project

13 years agomoved classes into different project
cmzmasek@gmail.com [Wed, 12 Oct 2011 19:57:29 +0000 (19:57 +0000)]
moved classes into different project

13 years agoAllow to retrieve a snapshot of the edited phylogenetic tree using javascript code...
herve.menager@gmail.com [Mon, 10 Oct 2011 10:02:57 +0000 (10:02 +0000)]
Allow to retrieve a snapshot of the edited phylogenetic tree using javascript code, in order to be able to print or store it server-side. The ArchaeopteryxE class contains a getCurrentPhylogenyGraphicsAsBase64EncodedString public method which can be called from Javascript to retrieve the current image. This feature adds a dependency on the Apache common-codecs library (for base64 encoding).

13 years ago(no commit message)
cmzmasek@gmail.com [Sat, 1 Oct 2011 01:54:52 +0000 (01:54 +0000)]

13 years agoin progress
cmzmasek@gmail.com [Wed, 28 Sep 2011 23:48:23 +0000 (23:48 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 28 Sep 2011 23:47:57 +0000 (23:47 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 28 Sep 2011 02:22:52 +0000 (02:22 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 28 Sep 2011 02:22:34 +0000 (02:22 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Tue, 27 Sep 2011 23:35:42 +0000 (23:35 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 21 Sep 2011 18:37:48 +0000 (18:37 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 21 Sep 2011 04:55:02 +0000 (04:55 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Wed, 21 Sep 2011 03:43:47 +0000 (03:43 +0000)]
in progress

13 years agocolors
cmzmasek@gmail.com [Mon, 19 Sep 2011 22:24:29 +0000 (22:24 +0000)]
colors

13 years agoin progress
cmzmasek@gmail.com [Mon, 19 Sep 2011 22:17:22 +0000 (22:17 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Mon, 19 Sep 2011 18:30:02 +0000 (18:30 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Mon, 19 Sep 2011 18:29:39 +0000 (18:29 +0000)]
in progress

13 years agoneeds: testing, proper error messages and dialogs, code cleanup, cache mechanism...
cmzmasek@gmail.com [Mon, 19 Sep 2011 18:28:22 +0000 (18:28 +0000)]
needs: testing, proper error messages and dialogs, code cleanup, cache mechanism for lineages!

13 years agoin progress
cmzmasek@gmail.com [Mon, 19 Sep 2011 17:40:29 +0000 (17:40 +0000)]
in progress

13 years agoneeds: testing, proper error messages and dialogs, code cleanup, cache mechanism...
cmzmasek [Mon, 19 Sep 2011 05:02:45 +0000 (05:02 +0000)]
needs: testing, proper error messages and dialogs, code cleanup, cache mechanism for lineages!

13 years agoin progress
cmzmasek [Mon, 19 Sep 2011 02:30:04 +0000 (02:30 +0000)]
in progress

13 years agocolorization via rank added
cmzmasek@gmail.com [Sat, 17 Sep 2011 19:39:35 +0000 (19:39 +0000)]
colorization via rank added

13 years agocolorization via rank added
cmzmasek@gmail.com [Sat, 17 Sep 2011 19:39:04 +0000 (19:39 +0000)]
colorization via rank added

13 years agocolorization via rank added
cmzmasek@gmail.com [Sat, 17 Sep 2011 19:38:29 +0000 (19:38 +0000)]
colorization via rank added

13 years agofixed some problems
cmzmasek@gmail.com [Sat, 17 Sep 2011 18:03:59 +0000 (18:03 +0000)]
fixed some problems

13 years agoin progress
cmzmasek@gmail.com [Sat, 17 Sep 2011 03:19:59 +0000 (03:19 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Sat, 17 Sep 2011 03:19:09 +0000 (03:19 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Sat, 17 Sep 2011 03:18:22 +0000 (03:18 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Sat, 17 Sep 2011 00:14:59 +0000 (00:14 +0000)]
in progress

13 years agoin progress
cmzmasek@gmail.com [Sat, 17 Sep 2011 00:14:45 +0000 (00:14 +0000)]
in progress

13 years agonew app
cmzmasek@gmail.com [Thu, 15 Sep 2011 23:08:14 +0000 (23:08 +0000)]
new app

13 years agonew app
cmzmasek@gmail.com [Thu, 15 Sep 2011 23:07:20 +0000 (23:07 +0000)]
new app

13 years ago?
cmzmasek@gmail.com [Tue, 13 Sep 2011 21:57:02 +0000 (21:57 +0000)]
?

13 years ago?
cmzmasek@gmail.com [Mon, 12 Sep 2011 23:19:26 +0000 (23:19 +0000)]
?

13 years agochanged order
cmzmasek [Mon, 12 Sep 2011 00:04:47 +0000 (00:04 +0000)]
changed order

13 years agoCan change branch width now [Kyoto]
cmzmasek [Fri, 12 Aug 2011 07:09:10 +0000 (07:09 +0000)]
Can change branch width now [Kyoto]

13 years agosearch binary characters
cmzmasek@gmail.com [Thu, 28 Jul 2011 22:42:39 +0000 (22:42 +0000)]
search binary characters

13 years agosearch binary characters
cmzmasek@gmail.com [Thu, 28 Jul 2011 22:34:16 +0000 (22:34 +0000)]
search binary characters

13 years agosearch binary characters
cmzmasek@gmail.com [Thu, 28 Jul 2011 20:06:51 +0000 (20:06 +0000)]
search binary characters

13 years agosearch binary characters
cmzmasek@gmail.com [Thu, 28 Jul 2011 20:06:36 +0000 (20:06 +0000)]
search binary characters

13 years agowork in airplane
cmzmasek [Mon, 18 Jul 2011 16:04:01 +0000 (16:04 +0000)]
work in airplane

13 years agoin progress
cmzmasek@gmail.com [Tue, 5 Jul 2011 23:26:23 +0000 (23:26 +0000)]
in progress