amwaterhouse [Thu, 11 May 2006 13:54:10 +0000 (13:54 +0000)]
Invert selection
amwaterhouse [Thu, 11 May 2006 13:53:49 +0000 (13:53 +0000)]
Recently loaded files, urls, append sequences to Alignment
amwaterhouse [Wed, 10 May 2006 14:06:51 +0000 (14:06 +0000)]
sequenceRef added to annotation
amwaterhouse [Wed, 10 May 2006 13:30:10 +0000 (13:30 +0000)]
Correction for sequences with start not equal to 1
amwaterhouse [Wed, 10 May 2006 12:59:19 +0000 (12:59 +0000)]
Copy and paste of annotations with seqrefs
amwaterhouse [Wed, 10 May 2006 12:58:44 +0000 (12:58 +0000)]
implements ClipboardOwner
amwaterhouse [Wed, 10 May 2006 12:57:56 +0000 (12:57 +0000)]
saves and loads annotations with seqrefs
amwaterhouse [Wed, 10 May 2006 12:57:39 +0000 (12:57 +0000)]
Draw an offscreen Image
amwaterhouse [Wed, 10 May 2006 12:57:21 +0000 (12:57 +0000)]
Annotations must createSequenceMapping if seqRef not null
amwaterhouse [Wed, 10 May 2006 12:56:30 +0000 (12:56 +0000)]
Create sequence mapping for annotations
amwaterhouse [Wed, 10 May 2006 12:56:02 +0000 (12:56 +0000)]
addAnnotation with seqRef
amwaterhouse [Wed, 10 May 2006 12:55:17 +0000 (12:55 +0000)]
Changes case to end of alignment
amwaterhouse [Wed, 10 May 2006 12:54:52 +0000 (12:54 +0000)]
remove import
amwaterhouse [Wed, 10 May 2006 12:52:11 +0000 (12:52 +0000)]
Save seqref with annotations
amwaterhouse [Tue, 2 May 2006 16:44:32 +0000 (16:44 +0000)]
spelling err
amwaterhouse [Tue, 2 May 2006 12:24:48 +0000 (12:24 +0000)]
2.08.1
amwaterhouse [Tue, 2 May 2006 12:23:48 +0000 (12:23 +0000)]
Make nullFrame only once
amwaterhouse [Tue, 2 May 2006 12:23:28 +0000 (12:23 +0000)]
Remove unnecessary panel, also nullFrame created only once
amwaterhouse [Tue, 2 May 2006 12:23:01 +0000 (12:23 +0000)]
Middle mouse to compress alignment
amwaterhouse [Tue, 2 May 2006 12:22:20 +0000 (12:22 +0000)]
Check that fontsize > 0
amwaterhouse [Tue, 2 May 2006 12:21:57 +0000 (12:21 +0000)]
Toggle Case added
amwaterhouse [Tue, 2 May 2006 09:28:24 +0000 (09:28 +0000)]
Toggle case added to popup menu
amwaterhouse [Mon, 1 May 2006 14:29:21 +0000 (14:29 +0000)]
Remove edit menu if no group defined
amwaterhouse [Mon, 1 May 2006 14:28:51 +0000 (14:28 +0000)]
Maintain original transparency setting
amwaterhouse [Mon, 1 May 2006 14:28:32 +0000 (14:28 +0000)]
Change name to editMenu
amwaterhouse [Mon, 1 May 2006 13:24:10 +0000 (13:24 +0000)]
If Mac, use the fillRoundRect method
amwaterhouse [Mon, 1 May 2006 13:23:46 +0000 (13:23 +0000)]
Forces init of alignPanel if annotations added
amwaterhouse [Mon, 1 May 2006 13:22:58 +0000 (13:22 +0000)]
Fixes redraw top of group bug
amwaterhouse [Mon, 1 May 2006 13:22:38 +0000 (13:22 +0000)]
If no group, hide menu
amwaterhouse [Mon, 1 May 2006 13:22:22 +0000 (13:22 +0000)]
If mac, use the fillRoundRect
amwaterhouse [Mon, 1 May 2006 13:22:02 +0000 (13:22 +0000)]
java 1.1 compatibility
amwaterhouse [Fri, 28 Apr 2006 17:07:13 +0000 (17:07 +0000)]
Helix sizes
amwaterhouse [Fri, 28 Apr 2006 16:38:33 +0000 (16:38 +0000)]
Make sure end is less than sequence width
amwaterhouse [Fri, 28 Apr 2006 16:38:10 +0000 (16:38 +0000)]
Group width -1
amwaterhouse [Fri, 28 Apr 2006 16:37:58 +0000 (16:37 +0000)]
Watch for exceeding width limit
amwaterhouse [Fri, 28 Apr 2006 13:47:24 +0000 (13:47 +0000)]
If autoCalculate selected, recalculate immediately
amwaterhouse [Fri, 28 Apr 2006 13:45:40 +0000 (13:45 +0000)]
Back to gray line
amwaterhouse [Fri, 28 Apr 2006 13:42:04 +0000 (13:42 +0000)]
Back to gray line
amwaterhouse [Fri, 28 Apr 2006 13:38:39 +0000 (13:38 +0000)]
validCharWidth moved to viewport
amwaterhouse [Fri, 28 Apr 2006 13:26:22 +0000 (13:26 +0000)]
Annoying little line at end of wrapped alignment
amwaterhouse [Fri, 28 Apr 2006 12:35:12 +0000 (12:35 +0000)]
validCharWidth checks
amwaterhouse [Fri, 28 Apr 2006 12:34:28 +0000 (12:34 +0000)]
Edit menu added
amwaterhouse [Fri, 28 Apr 2006 12:34:18 +0000 (12:34 +0000)]
Add to palette layer
amwaterhouse [Fri, 28 Apr 2006 12:34:06 +0000 (12:34 +0000)]
Helix glyphs fixed
amwaterhouse [Fri, 28 Apr 2006 12:33:44 +0000 (12:33 +0000)]
Case sensitive
amwaterhouse [Fri, 28 Apr 2006 12:33:24 +0000 (12:33 +0000)]
changeCase
amwaterhouse [Fri, 28 Apr 2006 12:32:58 +0000 (12:32 +0000)]
Helix glyphs drawn correctly
amwaterhouse [Fri, 28 Apr 2006 12:32:36 +0000 (12:32 +0000)]
Dont select groups on ids
amwaterhouse [Fri, 28 Apr 2006 12:32:12 +0000 (12:32 +0000)]
Case shifter
amwaterhouse [Fri, 21 Apr 2006 11:19:13 +0000 (11:19 +0000)]
Alignment compression on middle mouse button
amwaterhouse [Fri, 21 Apr 2006 10:41:29 +0000 (10:41 +0000)]
Modified sequence selection
amwaterhouse [Wed, 19 Apr 2006 15:58:15 +0000 (15:58 +0000)]
Multiple views, alignpanels not being used
amwaterhouse [Wed, 19 Apr 2006 14:32:11 +0000 (14:32 +0000)]
Alignment might not have any annotations
amwaterhouse [Tue, 18 Apr 2006 13:17:20 +0000 (13:17 +0000)]
-1 from east scale, wrapped alignment
amwaterhouse [Thu, 13 Apr 2006 13:28:42 +0000 (13:28 +0000)]
showInternalMessage jdk1.5 bug
amwaterhouse [Mon, 10 Apr 2006 15:54:47 +0000 (15:54 +0000)]
add back in again
amwaterhouse [Mon, 10 Apr 2006 15:30:41 +0000 (15:30 +0000)]
old image
amwaterhouse [Mon, 10 Apr 2006 15:29:56 +0000 (15:29 +0000)]
old images
amwaterhouse [Mon, 10 Apr 2006 15:27:02 +0000 (15:27 +0000)]
New images
amwaterhouse [Mon, 10 Apr 2006 15:16:46 +0000 (15:16 +0000)]
2.08, not 2.07
amwaterhouse [Mon, 10 Apr 2006 14:53:10 +0000 (14:53 +0000)]
To export page
amwaterhouse [Mon, 10 Apr 2006 14:52:56 +0000 (14:52 +0000)]
Links
jprocter [Mon, 10 Apr 2006 14:36:49 +0000 (14:36 +0000)]
load features/annotations typo.
jprocter [Mon, 10 Apr 2006 14:32:54 +0000 (14:32 +0000)]
added note about cursor mode disabling the popup menu.
jprocter [Mon, 10 Apr 2006 14:31:18 +0000 (14:31 +0000)]
typo and explanation for ignore gaps in consensus
jprocter [Mon, 10 Apr 2006 14:29:02 +0000 (14:29 +0000)]
reworded pad gaps
jprocter [Mon, 10 Apr 2006 14:28:53 +0000 (14:28 +0000)]
reworded pad gaps.
amwaterhouse [Mon, 10 Apr 2006 14:17:47 +0000 (14:17 +0000)]
2.08 update
jprocter [Mon, 10 Apr 2006 14:17:16 +0000 (14:17 +0000)]
put modellerpir in correct place!
jprocter [Mon, 10 Apr 2006 14:16:55 +0000 (14:16 +0000)]
updated menus and rearranged seqfeatures (again)
amwaterhouse [Mon, 10 Apr 2006 14:15:00 +0000 (14:15 +0000)]
Displays error line on error
jprocter [Mon, 10 Apr 2006 14:14:58 +0000 (14:14 +0000)]
fix links to complex html (that don't display) by quoting them
verbatim.
amwaterhouse [Mon, 10 Apr 2006 14:14:18 +0000 (14:14 +0000)]
Just removing new line character
jprocter [Mon, 10 Apr 2006 14:01:04 +0000 (14:01 +0000)]
moved Modeller/PIR description to its own home.
jprocter [Mon, 10 Apr 2006 14:00:46 +0000 (14:00 +0000)]
moved modellerpir to io
jprocter [Mon, 10 Apr 2006 13:59:34 +0000 (13:59 +0000)]
describing the Modeller/PIR output.
jprocter [Mon, 10 Apr 2006 13:18:43 +0000 (13:18 +0000)]
Fixed table border and updated restrictions
amwaterhouse [Mon, 10 Apr 2006 13:15:18 +0000 (13:15 +0000)]
Editing tab
jprocter [Mon, 10 Apr 2006 13:10:43 +0000 (13:10 +0000)]
added bit about modeller/pir
jprocter [Mon, 10 Apr 2006 13:06:40 +0000 (13:06 +0000)]
added annotationColouring to whats new and updated IO and cursorMode
(mac os and backspace==delete)
amwaterhouse [Mon, 10 Apr 2006 12:32:58 +0000 (12:32 +0000)]
del and backspace do the same thing
amwaterhouse [Mon, 10 Apr 2006 11:41:39 +0000 (11:41 +0000)]
Release Date width
jprocter [Mon, 10 Apr 2006 11:34:16 +0000 (11:34 +0000)]
extended preamble and added new heading for user defined annotation
instructions.
amwaterhouse [Mon, 10 Apr 2006 11:33:35 +0000 (11:33 +0000)]
tab name is editing
jprocter [Mon, 10 Apr 2006 11:31:10 +0000 (11:31 +0000)]
doco
jprocter [Mon, 10 Apr 2006 11:27:04 +0000 (11:27 +0000)]
doco changes.
jprocter [Mon, 10 Apr 2006 11:21:47 +0000 (11:21 +0000)]
added 2.08 application version dialog box.
jprocter [Mon, 10 Apr 2006 11:19:45 +0000 (11:19 +0000)]
feature settings dialog box for jalview 2.08 application
amwaterhouse [Mon, 10 Apr 2006 11:11:17 +0000 (11:11 +0000)]
Protein desc bug fixed
amwaterhouse [Mon, 10 Apr 2006 11:10:26 +0000 (11:10 +0000)]
dont need to set - to -
amwaterhouse [Mon, 10 Apr 2006 11:10:06 +0000 (11:10 +0000)]
Fixed protein desc bug
jprocter [Sun, 9 Apr 2006 18:02:49 +0000 (18:02 +0000)]
doco writing.
amwaterhouse [Fri, 7 Apr 2006 14:15:40 +0000 (14:15 +0000)]
Takes popup away from mouseevent, prevents immediate copy
amwaterhouse [Fri, 7 Apr 2006 13:58:11 +0000 (13:58 +0000)]
No need for vetoablechange
amwaterhouse [Fri, 7 Apr 2006 13:48:39 +0000 (13:48 +0000)]
Set all gaps to - symbol
amwaterhouse [Fri, 7 Apr 2006 12:57:17 +0000 (12:57 +0000)]
padGaps set in preferences
amwaterhouse [Fri, 7 Apr 2006 12:52:54 +0000 (12:52 +0000)]
Padgaps pref set
amwaterhouse [Fri, 7 Apr 2006 12:52:29 +0000 (12:52 +0000)]
ModellerOutput set in preferences
amwaterhouse [Fri, 7 Apr 2006 11:27:55 +0000 (11:27 +0000)]
Autocalculate consensus set in preferences
amwaterhouse [Fri, 7 Apr 2006 11:27:19 +0000 (11:27 +0000)]
Scroll cursor wrapped alignment
git://source.jalview.org / jalview.git / log